Resource
| Id | Histone_ChIP-seq/ENCSR194ZHE |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR194ZHE [biosample_summary="Homo sapiens placenta tissue embryo (16 weeks)" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1 summary: embryo (16 weeks) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN642UCK|/analyses/ENCAN642UCK/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF884XMV|/files/ENCFF884XMV/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 26488726 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR194ZHE | float |
Histone_ChIP-seq_ENCSR194ZHE |
Histone_ChIP-seq ENCSR194ZHE [biosample_summary="Homo sapiens placenta tissue embryo (16 weeks)" and target="H3K4me1"]
|
 |
[1.52, 18.5] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 114580686 | 3.56% | 122596 |
| chr1 | 11910266 | 4.78% | 12249 |
| chr1_KI270713v1_random | 1054 | 2.59% | 2 |
| chr1_KI270714v1_random | 237 | 0.57% | 1 |
| chr2 | 8707737 | 3.60% | 9494 |
| chr3 | 7204845 | 3.63% | 7832 |
| chr4 | 4400116 | 2.31% | 5086 |
| chr5 | 5769295 | 3.18% | 6398 |
| chr6 | 6433653 | 3.77% | 7295 |
| chr7 | 5754204 | 3.61% | 6354 |
| chr8 | 4804946 | 3.31% | 5284 |
| chr9 | 5369385 | 3.88% | 5591 |
| chr10 | 5592778 | 4.18% | 5957 |
| chr11 | 6192059 | 4.58% | 6251 |
| chr12 | 5370041 | 4.03% | 5939 |
| chr13 | 2468790 | 2.16% | 2914 |
| chr14 | 3903087 | 3.65% | 3990 |
| chr14_GL000194v1_random | 757 | 0.40% | 1 |
| chr14_KI270725v1_random | 364 | 0.21% | 1 |
| chr15 | 3935569 | 3.86% | 4192 |
| chr16 | 4361401 | 4.83% | 4282 |
| chr16_KI270728v1_random | 3859 | 0.21% | 4 |
| chr17 | 5897189 | 7.08% | 5932 |
| chr17_GL000205v2_random | 10006 | 5.39% | 9 |
| chr17_KI270729v1_random | 367 | 0.13% | 1 |
| chr18 | 2010730 | 2.50% | 2397 |
| chr19 | 5383368 | 9.18% | 5489 |
| chr20 | 3511961 | 5.45% | 3573 |
| chr21 | 1351086 | 2.89% | 1506 |
| chr22 | 2973761 | 5.85% | 2760 |
| chr22_KI270732v1_random | 351 | 0.84% | 1 |
| chr22_KI270733v1_random | 380 | 0.21% | 1 |
| chr22_KI270735v1_random | 466 | 1.09% | 1 |
| chrUn_GL000195v1 | 2755 | 1.51% | 5 |
| chrUn_GL000219v1 | 288 | 0.16% | 1 |
| chrUn_KI270438v1 | 1007 | 0.90% | 2 |
| chrUn_KI270442v1 | 464 | 0.12% | 1 |
| chrUn_KI270749v1 | 303 | 0.19% | 1 |
| chrX | 1202484 | 0.77% | 1720 |
| chrY | 49277 | 0.09% | 79 |
| 3327 contigs with no values (125001610 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 122596 | 215 | 23028 | 934.62 | 725 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF033NSH.bed.gz | 2.57 MB | 68f804b575b8e3b03f32d9b7e2b2a7c9 |
| ENCFF033NSH.tabix.bed.gz | 1.23 MB | fb8db777ea187c651a63a1ff72d6a985 |
| ENCFF033NSH.tabix.bed.gz.tbi | 319.08 KB | 36eb9e0f3dd7028a710480ab5040e5f2 |
| genomic_resource.yaml | 1.96 KB | 37a849773255ab39699a4329a158d577 |
| statistics/ |