Resource
| Id | Histone_ChIP-seq/ENCSR194TFK |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR194TFK [biosample_summary="Homo sapiens endodermal cell originated from HUES64" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1 summary: male embryo output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN593IKX|/analyses/ENCAN593IKX/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF038ITI|/files/ENCFF038ITI/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 14541644 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR194TFK | float |
Histone_ChIP-seq_ENCSR194TFK |
Histone_ChIP-seq ENCSR194TFK [biosample_summary="Homo sapiens endodermal cell originated from HUES64" and target="H3K4me1"]
|
 |
[1.86, 14.3] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 44092726 | 1.37% | 86819 |
| chr1 | 4472737 | 1.80% | 8528 |
| chr2 | 3785104 | 1.56% | 7527 |
| chr3 | 3212030 | 1.62% | 6376 |
| chr4 | 2203648 | 1.16% | 4628 |
| chr5 | 2952045 | 1.63% | 5884 |
| chr6 | 2605117 | 1.53% | 5223 |
| chr7 | 2128615 | 1.34% | 4290 |
| chr8 | 2121220 | 1.46% | 4276 |
| chr9 | 1991177 | 1.44% | 3860 |
| chr10 | 2234642 | 1.67% | 4337 |
| chr11 | 2643595 | 1.96% | 5036 |
| chr12 | 2144156 | 1.61% | 4303 |
| chr13 | 1322702 | 1.16% | 2677 |
| chr14 | 1568933 | 1.47% | 3054 |
| chr15 | 1534621 | 1.50% | 2940 |
| chr16 | 1283936 | 1.42% | 2490 |
| chr17 | 1606781 | 1.93% | 3020 |
| chr18 | 1274476 | 1.59% | 2526 |
| chr19 | 511724 | 0.87% | 979 |
| chr20 | 1133567 | 1.76% | 2163 |
| chr21 | 423041 | 0.91% | 855 |
| chr22 | 705870 | 1.39% | 1281 |
| chrX | 223446 | 0.14% | 542 |
| chrY | 9543 | 0.02% | 24 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 86819 | 175 | 4243 | 507.87 | 438 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF145AXU.bed.gz | 1.62 MB | 66257b8482ee7a651a5065b0d36734bd |
| ENCFF145AXU.tabix.bed.gz | 846.81 KB | 0a052c8d7722300e01894684e5dd9910 |
| ENCFF145AXU.tabix.bed.gz.tbi | 349.1 KB | 7441eed1c3b22fa5f599d43af2f323ab |
| genomic_resource.yaml | 1.98 KB | ba0162441bcbb9b8bb0c58233d6156b4 |
| statistics/ |