Resource

Id Histone_ChIP-seq/ENCSR194MJAcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR194MJA [biosample_summary="Homo sapiens placental basal plate tissue female embryo (40 weeks)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR194MJA
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_NTR_0003013/
  • biosample_summary: Homo sapiens placental basal plate tissue female embryo (40 weeks)
  • date_created: 2017-03-22T16:17:00.717304+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR194MJA
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (40 weeks)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR194MJA float

Histone_ChIP-seq_ENCSR194MJA
Histone_ChIP-seq ENCSR194MJA [biosample_summary="Homo sapiens placental basal plate tissue female embryo (40 weeks)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR194MJA [1.76, 97.5]
n
22,272,485
mean
15.7
sd
7.61

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 222724850.69% 20655
chr1 2204485 0.89% 2017
chr1_KI270712v1_random 772 0.44% 2
chr1_KI270713v1_random 225 0.55% 1
chr1_KI270714v1_random 375 0.90% 1
chr2 1496782 0.62% 1357
chr3 1260484 0.64% 1147
chr4 882480 0.46% 791
chr4_GL000008v2_random 387 0.18% 1
chr5 1061462 0.58% 943
chr6 1329199 0.78% 1207
chr7 1112269 0.70% 1029
chr8 810198 0.56% 727
chr9 936235 0.68% 880
chr10 897151 0.67% 806
chr11 1227366 0.91% 1104
chr12 1121679 0.84% 1032
chr13 416431 0.36% 388
chr14 736399 0.69% 683
chr15 721038 0.71% 662
chr16 920677 1.02% 845
chr17 1323300 1.59% 1217
chr17_GL000205v2_random 1515 0.82% 2
chr17_KI270729v1_random 1024 0.36% 2
chr18 354037 0.44% 353
chr19 1558263 2.66% 1512
chr20 558475 0.87% 530
chr21 210099 0.45% 205
chr22 505334 0.99% 500
chr22_KI270732v1_random 578 1.39% 2
chrM 10946 66.06% 8
chrUn_GL000218v1 313 0.19% 1
chrUn_GL000219v1 2263 1.26% 2
chrUn_KI270438v1 1922 1.71% 4
chrUn_KI270466v1 353 28.63% 1
chrUn_KI270467v1 982 25.05% 3
chrUn_KI270749v1 308 0.19% 1
chrX 606041 0.39% 687
chrY 638 <0.01% 2
3328 contigs with no values (127467567 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 20655 195 7703 1078.31 939
global segment-length histogram

Files

Filename Size md5
ENCFF786WXF.bed.gz 475.94 KB adf2f3099431a1f1f099817238afb27c
ENCFF786WXF.tabix.bed.gz 226.25 KB bc14eccc3395d5ea0899804b6e323261
ENCFF786WXF.tabix.bed.gz.tbi 132.01 KB b73f9883e22d71698f94fbf663995cd1
genomic_resource.yaml 2.03 KB f5a76ffe0613421f4cf1edb113a1c23a
statistics/