Resource
| Id | Histone_ChIP-seq/ENCSR193XWO |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR193XWO [biosample_summary="Homo sapiens muscle of trunk tissue female embryo (115 days)" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: female embryo (115 days) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN421WNL|/analyses/ENCAN421WNL/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN421WNL|/analyses/ENCAN421WNL/} has in progress subobject document {02f162ca-c5b2-45ed-b7d6-8abd11a3cfe5|/documents/02f162ca-c5b2-45ed-b7d6-8abd11a3cfe5/} audit_not_compliant: Processed alignments file {ENCFF323BWP|/files/ENCFF323BWP/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 30618887 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR193XWO | float |
Histone_ChIP-seq_ENCSR193XWO |
Histone_ChIP-seq ENCSR193XWO [biosample_summary="Homo sapiens muscle of trunk tissue female embryo (115 days)" and target="H3K36me3"]
|
 |
[1.68, 18.7] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 99904688 | 3.11% | 168966 |
| chr1 | 10014199 | 4.02% | 16776 |
| chr2 | 7113216 | 2.94% | 13446 |
| chr3 | 5881566 | 2.97% | 10658 |
| chr4 | 3323546 | 1.75% | 6588 |
| chr5 | 4361807 | 2.40% | 8235 |
| chr6 | 4184978 | 2.45% | 7610 |
| chr7 | 4567568 | 2.87% | 7890 |
| chr8 | 2952022 | 2.03% | 5642 |
| chr9 | 4705042 | 3.40% | 7422 |
| chr10 | 4440108 | 3.32% | 8154 |
| chr11 | 5417116 | 4.01% | 8529 |
| chr12 | 5385177 | 4.04% | 8657 |
| chr13 | 1844539 | 1.61% | 3755 |
| chr14 | 3396662 | 3.17% | 6060 |
| chr15 | 3647209 | 3.58% | 6510 |
| chr16 | 5009335 | 5.55% | 7283 |
| chr17 | 6506576 | 7.82% | 9654 |
| chr18 | 1382828 | 1.72% | 2954 |
| chr19 | 6818252 | 11.63% | 9091 |
| chr20 | 3386314 | 5.25% | 5288 |
| chr21 | 1154317 | 2.47% | 1861 |
| chr22 | 3303162 | 6.50% | 4546 |
| chrX | 1109149 | 0.71% | 2357 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 168966 | 150 | 13509 | 591.27 | 394 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF812NVQ.bed.gz | 3.19 MB | ceb89b942d4fb5642984d1ae81f89ede |
| ENCFF812NVQ.tabix.bed.gz | 1.58 MB | 7fda19da036377157d73f29ea0897ab2 |
| ENCFF812NVQ.tabix.bed.gz.tbi | 189.19 KB | 8615549e39a7ae189dc707b54be9390f |
| genomic_resource.yaml | 2.23 KB | 9fa24a368bcc3f71073e6f700cb166de |
| statistics/ |