Resource
| Id | Histone_ChIP-seq/ENCSR191ZQT |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR191ZQT [biosample_summary="Homo sapiens B cell male adult (37 years)" and target="H3K27ac"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (37 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN182NAM|/analyses/ENCAN182NAM/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed alignments file {ENCFF365LRL|/files/ENCFF365LRL/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 19824667 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF365LRL|/files/ENCFF365LRL/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR191ZQT | float |
Histone_ChIP-seq_ENCSR191ZQT |
Histone_ChIP-seq ENCSR191ZQT [biosample_summary="Homo sapiens B cell male adult (37 years)" and target="H3K27ac"]
|
 |
[1.86, 142] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 41073591 | 1.28% | 38536 |
| chr1 | 3917813 | 1.57% | 3744 |
| chr1_KI270713v1_random | 557 | 1.37% | 2 |
| chr2 | 3191175 | 1.32% | 2738 |
| chr3 | 2435224 | 1.23% | 2305 |
| chr4 | 1479588 | 0.78% | 1479 |
| chr5 | 1982110 | 1.09% | 1717 |
| chr6 | 2688443 | 1.57% | 2364 |
| chr7 | 1813259 | 1.14% | 1804 |
| chr8 | 1690573 | 1.16% | 1514 |
| chr9 | 1615191 | 1.17% | 1538 |
| chr10 | 1895927 | 1.42% | 1710 |
| chr11 | 2188718 | 1.62% | 1926 |
| chr12 | 2180864 | 1.64% | 2046 |
| chr13 | 810183 | 0.71% | 775 |
| chr14 | 1512390 | 1.41% | 1367 |
| chr15 | 1313006 | 1.29% | 1167 |
| chr16 | 1549941 | 1.72% | 1565 |
| chr17 | 2013290 | 2.42% | 2011 |
| chr17_GL000205v2_random | 2387 | 1.29% | 2 |
| chr18 | 720909 | 0.90% | 668 |
| chr19 | 2262975 | 3.86% | 2218 |
| chr20 | 1076859 | 1.67% | 1087 |
| chr21 | 388024 | 0.83% | 410 |
| chr22 | 1032824 | 2.03% | 982 |
| chrUn_GL000219v1 | 547 | 0.31% | 1 |
| chrX | 1245145 | 0.80% | 1331 |
| chrY | 65669 | 0.11% | 65 |
| 3339 contigs with no values (128671551 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 38536 | 175 | 19096 | 1065.85 | 703 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF059WXH.bed.gz | 954.65 KB | 6cef53c755edc5f9850a3510cb07dc90 |
| ENCFF059WXH.tabix.bed.gz | 422.88 KB | 82fd0e8fa15112b3757220a90cc129a2 |
| ENCFF059WXH.tabix.bed.gz.tbi | 145.2 KB | ab590e143511ddf3fd70d1f761f4840f |
| genomic_resource.yaml | 2.58 KB | ad19f49268ef43955a10b20f8950fa00 |
| statistics/ |