Histone_ChIP-seq_ENCSR191ZQT
Histone_ChIP-seq ENCSR191ZQT [biosample_summary="Homo sapiens B cell male adult (37 years)" and target="H3K27ac"]
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| Id: | Histone_ChIP-seq/ENCSR191ZQT |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR191ZQT [biosamplesummary="Homo sapiens B cell male adult (37 years)" and target="H3K27ac"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (37 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN182NAM|/analyses/ENCAN182NAM/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed alignments file {ENCFF365LRL|/files/ENCFF365LRL/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 19824667 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF365LRL|/files/ENCFF365LRL/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR191ZQT | float |
Histone_ChIP-seq_ENCSR191ZQT |
Histone_ChIP-seq ENCSR191ZQT [biosample_summary="Homo sapiens B cell male adult (37 years)" and target="H3K27ac"]
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[1.86, 142] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF059WXH.bed.gz | 954.65 KB | 6cef53c755edc5f9850a3510cb07dc90 |
| ENCFF059WXH.bed.gz.dvc | 100.0 B | fcf2c6982fb92f71f06a53ea5eac46df |
| ENCFF059WXH.tabix.bed.gz | 422.88 KB | 82fd0e8fa15112b3757220a90cc129a2 |
| ENCFF059WXH.tabix.bed.gz.dvc | 106.0 B | f08693ce7d8743e791e79ac9ab7f529b |
| ENCFF059WXH.tabix.bed.gz.tbi | 145.2 KB | ab590e143511ddf3fd70d1f761f4840f |
| ENCFF059WXH.tabix.bed.gz.tbi.dvc | 110.0 B | 051d32039d1a2b5748e8f60fe7acc876 |
| genomic_resource.yaml | 2.58 KB | ad19f49268ef43955a10b20f8950fa00 |
| genomic_resource_original.yaml | 2.46 KB | 0776ee0764feb4a2cdae4b290c53df1b |
| statistics/ |