Resource
| Id | Histone_ChIP-seq/ENCSR191OEG |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR191OEG [biosample_summary="Homo sapiens duodenal mucosa tissue male adult (59 years)" and target="H3K9ac"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (59 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN153FMR|/analyses/ENCAN153FMR/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: Processed redacted alignments file {ENCFF505ZEC|/files/ENCFF505ZEC/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline has 11899452 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR191OEG | float |
Histone_ChIP-seq_ENCSR191OEG |
Histone_ChIP-seq ENCSR191OEG [biosample_summary="Homo sapiens duodenal mucosa tissue male adult (59 years)" and target="H3K9ac"]
|
 |
[2.23, 65.8] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 40968066 | 1.27% | 34695 |
| chr1 | 4400624 | 1.77% | 3669 |
| chr2 | 2754115 | 1.14% | 2362 |
| chr3 | 2258632 | 1.14% | 1862 |
| chr4 | 1466566 | 0.77% | 1225 |
| chr5 | 1837499 | 1.01% | 1477 |
| chr6 | 2321334 | 1.36% | 1921 |
| chr7 | 1834665 | 1.15% | 1569 |
| chr8 | 1432809 | 0.99% | 1309 |
| chr9 | 1728437 | 1.25% | 1465 |
| chr10 | 1738360 | 1.30% | 1491 |
| chr11 | 2360658 | 1.75% | 1931 |
| chr12 | 2095444 | 1.57% | 1696 |
| chr13 | 786672 | 0.69% | 661 |
| chr14 | 1467531 | 1.37% | 1231 |
| chr15 | 1291925 | 1.27% | 1113 |
| chr16 | 1703644 | 1.89% | 1519 |
| chr17 | 2704169 | 3.25% | 2286 |
| chr18 | 670662 | 0.83% | 582 |
| chr19 | 2468097 | 4.21% | 2151 |
| chr20 | 1144286 | 1.78% | 980 |
| chr21 | 450418 | 0.96% | 399 |
| chr22 | 1060759 | 2.09% | 939 |
| chrX | 958699 | 0.61% | 832 |
| chrY | 32061 | 0.06% | 25 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 34695 | 270 | 13563 | 1180.81 | 902 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF149GQZ.bed.gz | 857.17 KB | f82c7cb9f5b410115a3a26d4d9f03a00 |
| ENCFF149GQZ.tabix.bed.gz | 384.02 KB | aaf1d7bf78c83c2e549408e5e440b356 |
| ENCFF149GQZ.tabix.bed.gz.tbi | 156.51 KB | 3ff3d3bc34bdfcb5a06367bf71a79a70 |
| genomic_resource.yaml | 2.0 KB | e74e3fc416c6bbf36b840080040a2bb5 |
| statistics/ |