Resource
| Id | Histone_ChIP-seq/ENCSR189QAD |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR189QAD [biosample_summary="Homo sapiens adrenal gland tissue female adult (53 years)" and target="H3K27ac"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (53 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN799FMG|/analyses/ENCAN799FMG/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF070MRW|/files/ENCFF070MRW/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.90. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR189QAD | float |
Histone_ChIP-seq_ENCSR189QAD |
Histone_ChIP-seq ENCSR189QAD [biosample_summary="Homo sapiens adrenal gland tissue female adult (53 years)" and target="H3K27ac"]
|
 |
[1.38, 97.4] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 108657785 | 3.38% | 96517 |
| chr1 | 10737923 | 4.31% | 9280 |
| chr2 | 8411022 | 3.47% | 7582 |
| chr3 | 6559342 | 3.31% | 6130 |
| chr4 | 3574586 | 1.88% | 3593 |
| chr5 | 5171264 | 2.85% | 4768 |
| chr6 | 5091443 | 2.98% | 4945 |
| chr7 | 4862343 | 3.05% | 4565 |
| chr8 | 4434444 | 3.06% | 4104 |
| chr9 | 5296959 | 3.83% | 4570 |
| chr10 | 5433912 | 4.06% | 4947 |
| chr11 | 6220007 | 4.60% | 5061 |
| chr12 | 5797165 | 4.35% | 5079 |
| chr13 | 2081782 | 1.82% | 2059 |
| chr14 | 3404757 | 3.18% | 3028 |
| chr15 | 3667974 | 3.60% | 3354 |
| chr16 | 4282767 | 4.74% | 3618 |
| chr17 | 6286821 | 7.55% | 5020 |
| chr18 | 2048026 | 2.55% | 1963 |
| chr19 | 5206312 | 8.88% | 3967 |
| chr20 | 3371375 | 5.23% | 2957 |
| chr21 | 1316131 | 2.82% | 1198 |
| chr22 | 3194849 | 6.29% | 2561 |
| chrM | 6228 | 37.59% | 5 |
| chrX | 2200353 | 1.41% | 2163 |
| 3342 contigs with no values (186287931 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 96517 | 200 | 28063 | 1125.79 | 746 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF257XEM.bed.gz | 2.29 MB | 02803977c6bb8ac747e0fa455a165043 |
| ENCFF257XEM.tabix.bed.gz | 1.02 MB | 3e8703d0858216205baf7ad443558198 |
| ENCFF257XEM.tabix.bed.gz.tbi | 268.47 KB | 7515f8849cb662171409cfe617cde16a |
| genomic_resource.yaml | 2.15 KB | a9985975abed5f499610597a4609d321 |
| statistics/ |