Resource

Id Histone_ChIP-seq/ENCSR189AGRcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR189AGR [biosample_summary="Homo sapiens OCI-LY1" and target="H3K9me3"]
Description
Labels
  • accession: ENCSR189AGR
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0005907/
  • biosample_summary: Homo sapiens OCI-LY1
  • date_created: 2014-02-20T05:42:06.291623+00:00
  • date_released: 2014-07-11
  • doi: 10.17989/ENCSR189AGR
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: H3K9me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR189AGR float

Histone_ChIP-seq_ENCSR189AGR
Histone_ChIP-seq ENCSR189AGR [biosample_summary="Homo sapiens OCI-LY1" and target="H3K9me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR189AGR [1.43, 7.48]
n
15,790,750
mean
3.1
sd
0.655

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 157907500.49% 32846
chr1 1109690 0.45% 2409
chr2 1210761 0.50% 2633
chr3 1138815 0.57% 2362
chr4 737264 0.39% 1747
chr5 759462 0.42% 1711
chr6 680363 0.40% 1521
chr7 1819170 1.14% 3519
chr8 912354 0.63% 1798
chr9 560302 0.40% 1158
chr10 511353 0.38% 1096
chr11 418060 0.31% 906
chr12 739059 0.55% 1536
chr13 645938 0.56% 1375
chr14 470350 0.44% 1073
chr15 398359 0.39% 846
chr16 463123 0.51% 899
chr17 412097 0.49% 858
chr18 402683 0.50% 814
chr19 1681915 2.87% 3056
chr20 247339 0.38% 547
chr21 203774 0.44% 425
chr22 233180 0.46% 455
chrX 29528 0.02% 84
chrY 5811 0.01% 18
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 32846 205 7082 480.75 381
global segment-length histogram

Files

Filename Size md5
ENCFF888HWT.bed.gz 664.68 KB d23a8ff396cf5afd3a2eb0fd7376d56a
ENCFF888HWT.tabix.bed.gz 333.87 KB fe94d2e4d30ee919dfe904e859175850
ENCFF888HWT.tabix.bed.gz.tbi 150.07 KB 172c96a3e546244d72fab13b856a9bec
genomic_resource.yaml 1.59 KB 504a405e2d397e77cf46b3619f19f6de
statistics/