Resource

Id Histone_ChIP-seq/ENCSR187SVMcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR187SVM [biosample_summary="Homo sapiens tibial artery tissue male adult (54 years)" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR187SVM
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0007610/
  • biosample_summary: Homo sapiens tibial artery tissue male adult (54 years)
  • date_created: 2017-12-06T21:10:01.790364+00:00
  • date_released: 2018-12-11
  • doi: 10.17989/ENCSR187SVM
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: male adult (54 years)
  • status: released
  • submitter_comment:
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR187SVM float

Histone_ChIP-seq_ENCSR187SVM
Histone_ChIP-seq ENCSR187SVM [biosample_summary="Homo sapiens tibial artery tissue male adult (54 years)" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR187SVM [1.48, 15.5]
n
214,122,364
mean
4.75
sd
1.86

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 2141223646.66% 130633
chr1 19810606 7.96% 11445
chr1_KI270706v1_random 257 0.15% 1
chr1_KI270712v1_random 4203 2.39% 5
chr2 18210760 7.52% 11049
chr3 16853133 8.50% 9871
chr4 10938817 5.75% 6997
chr5 12979002 7.15% 8138
chr6 12966342 7.59% 8355
chr7 10197069 6.40% 6401
chr8 9646950 6.65% 5969
chr9 9482983 6.85% 5576
chr9_KI270717v1_random 375 0.94% 1
chr10 12599384 9.42% 7191
chr11 10664602 7.89% 6253
chr12 11141685 8.36% 6617
chr13 5336723 4.67% 3345
chr14 6716367 6.27% 4079
chr15 7503049 7.36% 4417
chr16 6129852 6.79% 3812
chr17 8181797 9.83% 4849
chr18 4283908 5.33% 2773
chr19 5406436 9.22% 3549
chr20 5316032 8.25% 3155
chr21 2413178 5.17% 1444
chr22 3744043 7.37% 2118
chrUn_GL000195v1 357 0.20% 1
chrX 3508002 2.25% 3122
chrY 86452 0.15% 100
3338 contigs with no values (128503029 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 130633 240 98907 1639.11 1123
global segment-length histogram

Files

Filename Size md5
ENCFF719CFT.bed.gz 3.27 MB cb4945f57029293bb6aa6cc455fcb522
ENCFF719CFT.tabix.bed.gz 1.4 MB 189dcb729e13fa36a084d0e75715e6e5
ENCFF719CFT.tabix.bed.gz.tbi 327.84 KB 5114ed93b7dfd215995fc2af65ee1789
genomic_resource.yaml 1.5 KB fca77a76d0ecd5ddb94cde6e2c65d45c
statistics/