Histone_ChIP-seq_ENCSR186QKH
Histone_ChIP-seq ENCSR186QKH [biosample_summary="Homo sapiens pancreas tissue male adult (34 years)" and target="H3K27me3"]
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| Id: | Histone_ChIP-seq/ENCSR186QKH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR186QKH [biosamplesummary="Homo sapiens pancreas tissue male adult (34 years)" and target="H3K27me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (34 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN995WOZ|/analyses/ENCAN995WOZ/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN995WOZ|/analyses/ENCAN995WOZ/} has in progress subobject document {345ebd9c-192c-4d77-a3c9-7621a45bc7c6|/documents/345ebd9c-192c-4d77-a3c9-7621a45bc7c6/} audit_not_compliant: Processed alignments file {ENCFF421ASP|/files/ENCFF421ASP/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 12241159 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF421ASP|/files/ENCFF421ASP/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF421ASP|/files/ENCFF421ASP/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.76. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR186QKH | float |
Histone_ChIP-seq_ENCSR186QKH |
Histone_ChIP-seq ENCSR186QKH [biosample_summary="Homo sapiens pancreas tissue male adult (34 years)" and target="H3K27me3"]
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[2.11, 6.61] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF123IZT.bed.gz | 70.04 KB | 410eb0046e00ab48d405499a1ceab77e |
| ENCFF123IZT.bed.gz.dvc | 99.0 B | c8f15f4c7d06e235c186ba70c08c1604 |
| ENCFF123IZT.tabix.bed.gz | 39.23 KB | b358b3eec6827bb7defa48270ba4b3ae |
| ENCFF123IZT.tabix.bed.gz.dvc | 105.0 B | 48246adac0bb393d9436fc5eafe0225a |
| ENCFF123IZT.tabix.bed.gz.tbi | 46.95 KB | 5b148e6419457184bc4abc2f35f70f8f |
| ENCFF123IZT.tabix.bed.gz.tbi.dvc | 109.0 B | 12ad30ca2793348fdfb995e4590c0580 |
| genomic_resource.yaml | 3.46 KB | 3fe8e9428512c58618f7388dc4f934e3 |
| genomic_resource_original.yaml | 3.33 KB | befec624b30dbcec20d0bce06169c6b3 |
| statistics/ |