Resource
| Id | Histone_ChIP-seq/ENCSR183LNU |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR183LNU [biosample_summary="Homo sapiens muscle of trunk tissue female embryo (115 days)" and target="H3K9me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: female embryo (115 days) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN542REP|/analyses/ENCAN542REP/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN542REP|/analyses/ENCAN542REP/} has in progress subobject document {7bc5282a-7ebc-44f8-a42c-12db8e0ce52b|/documents/7bc5282a-7ebc-44f8-a42c-12db8e0ce52b/} audit_not_compliant: Processed unfiltered alignments file {ENCFF549RFH|/files/ENCFF549RFH/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 31454459 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR183LNU | float |
Histone_ChIP-seq_ENCSR183LNU |
Histone_ChIP-seq ENCSR183LNU [biosample_summary="Homo sapiens muscle of trunk tissue female embryo (115 days)" and target="H3K9me3"]
|
 |
[1.88, 14.9] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 24842334 | 0.77% | 51091 |
| chr1 | 1331254 | 0.53% | 2889 |
| chr2 | 1507619 | 0.62% | 3256 |
| chr3 | 1146179 | 0.58% | 2557 |
| chr4 | 1296246 | 0.68% | 2798 |
| chr5 | 1374744 | 0.76% | 2933 |
| chr6 | 1159429 | 0.68% | 2603 |
| chr7 | 1524720 | 0.96% | 3094 |
| chr8 | 1547983 | 1.07% | 2931 |
| chr9 | 789046 | 0.57% | 1627 |
| chr10 | 1062079 | 0.79% | 2255 |
| chr11 | 1197459 | 0.89% | 2575 |
| chr12 | 1273017 | 0.96% | 2523 |
| chr13 | 703687 | 0.62% | 1537 |
| chr14 | 899055 | 0.84% | 1858 |
| chr15 | 724257 | 0.71% | 1384 |
| chr16 | 915621 | 1.01% | 1648 |
| chr17 | 575348 | 0.69% | 1163 |
| chr18 | 494643 | 0.62% | 1105 |
| chr19 | 2418098 | 4.13% | 4066 |
| chr20 | 483619 | 0.75% | 1030 |
| chr21 | 545507 | 1.17% | 1036 |
| chr22 | 343947 | 0.68% | 658 |
| chrX | 1522617 | 0.98% | 3544 |
| chrY | 6160 | 0.01% | 21 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 51091 | 155 | 8431 | 486.24 | 395 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF350DRR.bed.gz | 885.06 KB | d9aff08dbf0c671b57d1c8648a7a26ef |
| ENCFF350DRR.tabix.bed.gz | 468.2 KB | b50676d6073796fd7976f3ddc1cdba9a |
| ENCFF350DRR.tabix.bed.gz.tbi | 211.88 KB | 5344116bc7764653c0abb81641327eac |
| genomic_resource.yaml | 2.23 KB | e212b6fdd8314c6e3dc7362ec7fd8dd4 |
| statistics/ |