Resource
| Id | Histone_ChIP-seq/ENCSR181JFC |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR181JFC [biosample_summary="Homo sapiens adrenal gland tissue male adult (34 years)" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (34 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN970BYF|/analyses/ENCAN970BYF/} has in progress subobject document {11178cf7-d1ac-440d-8c0f-4fb4341b6a0f|/documents/11178cf7-d1ac-440d-8c0f-4fb4341b6a0f/} audit_internal_action: Released analysis {ENCAN970BYF|/analyses/ENCAN970BYF/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF934KYU|/files/ENCFF934KYU/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 27714973 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR181JFC | float |
Histone_ChIP-seq_ENCSR181JFC |
Histone_ChIP-seq ENCSR181JFC [biosample_summary="Homo sapiens adrenal gland tissue male adult (34 years)" and target="H3K27me3"]
|
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[2.12, 5.48] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 149472 | <0.01% | 450 |
| chr1 | 9730 | <0.01% | 29 |
| chr2 | 14175 | 0.01% | 43 |
| chr3 | 8090 | <0.01% | 26 |
| chr4 | 11033 | 0.01% | 33 |
| chr5 | 8963 | <0.01% | 27 |
| chr6 | 9061 | 0.01% | 28 |
| chr7 | 8707 | 0.01% | 25 |
| chr8 | 8194 | 0.01% | 24 |
| chr9 | 4101 | <0.01% | 13 |
| chr10 | 5680 | <0.01% | 17 |
| chr11 | 9509 | 0.01% | 29 |
| chr12 | 9884 | 0.01% | 29 |
| chr13 | 4217 | <0.01% | 14 |
| chr14 | 1419 | <0.01% | 5 |
| chr15 | 5271 | 0.01% | 17 |
| chr16 | 6361 | 0.01% | 20 |
| chr17 | 4090 | <0.01% | 12 |
| chr18 | 7823 | 0.01% | 22 |
| chr19 | 3951 | 0.01% | 10 |
| chr20 | 2633 | <0.01% | 8 |
| chr21 | 2791 | 0.01% | 9 |
| chr22 | 3506 | 0.01% | 9 |
| chrX | 283 | <0.01% | 1 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 450 | 205 | 790 | 332.16 | 309 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF595JZD.bed.gz | 9.29 KB | e8c83094782db937915d032641d4d33b |
| ENCFF595JZD.tabix.bed.gz | 4.87 KB | 44f2970e93c780e8e279564aabfb0ebc |
| ENCFF595JZD.tabix.bed.gz.tbi | 9.16 KB | d25c29816626d25327dd9b8f3b62782f |
| genomic_resource.yaml | 2.21 KB | a35ef779f15fcf133c6f235b00ac43dc |
| statistics/ |
