Resource

Id Histone_ChIP-seq/ENCSR180CHRcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR180CHR [biosample_summary="Homo sapiens substantia nigra tissue female adult (75 years)" and target="H3K27me3"]
Description
Labels
  • accession: ENCSR180CHR
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002038/
  • biosample_summary: Homo sapiens substantia nigra tissue female adult (75 years)
  • date_created: 2015-09-15T19:52:07.815332+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR180CHR
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (75 years)
  • status: released
  • submitter_comment:
  • target: H3K27me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR180CHR float

Histone_ChIP-seq_ENCSR180CHR
Histone_ChIP-seq ENCSR180CHR [biosample_summary="Homo sapiens substantia nigra tissue female adult (75 years)" and target="H3K27me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR180CHR [1.94, 11.3]
n
4,974,005
mean
4.86
sd
1.27

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 49740050.15% 14185
chr1 368609 0.15% 1050
chr2 415656 0.17% 1088
chr3 151085 0.08% 473
chr4 192349 0.10% 519
chr5 257690 0.14% 685
chr6 394974 0.23% 1030
chr7 309149 0.19% 759
chr8 196516 0.14% 584
chr9 175004 0.13% 488
chr10 287881 0.22% 784
chr11 201692 0.15% 608
chr12 274488 0.21% 769
chr13 95240 0.08% 280
chr14 160401 0.15% 425
chr15 115884 0.11% 353
chr16 131760 0.15% 396
chr17 347498 0.42% 896
chr18 80318 0.10% 237
chr19 176811 0.30% 516
chr20 143996 0.22% 443
chr21 41603 0.09% 128
chr22 64669 0.13% 208
chrX 390732 0.25% 1466
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 14185 140 3490 350.65 281
global segment-length histogram

Files

Filename Size md5
ENCFF878XDQ.bed.gz 246.41 KB bb0e38bd253c45dec27d5caa07f70d27
ENCFF878XDQ.tabix.bed.gz 132.57 KB 5258d7196de6b3e426c1adc5dd4cedb5
ENCFF878XDQ.tabix.bed.gz.tbi 72.9 KB 82dd28f0731265822c92c6cc6e9a2a5c
genomic_resource.yaml 2.03 KB a69cb39c4e0eb933f280dd0b661ccc03
statistics/