Histone_ChIP-seq_ENCSR180AAB
Histone_ChIP-seq ENCSR180AAB [biosample_summary="Homo sapiens PC-9" and target="H3F3A"]
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| Id: | Histone_ChIP-seq/ENCSR180AAB |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR180AAB [biosamplesummary="Homo sapiens PC-9" and target="H3F3A"] |
| Description: |
status: archived biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN341FIH|/analyses/ENCAN341FIH/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF763ZGF|/files/ENCFF763ZGF/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 19538231 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3F3A-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed alignments file {ENCFF792YEO|/files/ENCFF792YEO/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 39505078 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3F3A-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF763ZGF|/files/ENCFF763ZGF/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.81. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF763ZGF|/files/ENCFF763ZGF/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 5.00. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR180AAB | float |
Histone_ChIP-seq_ENCSR180AAB |
Histone_ChIP-seq ENCSR180AAB [biosample_summary="Homo sapiens PC-9" and target="H3F3A"]
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[1.5, 13.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF926ZHI.bed.gz | 2.91 MB | d55123468d632b4f281d6bf3cfa982fb |
| ENCFF926ZHI.bed.gz.dvc | 101.0 B | 540fb26192f35f0e65575d1bc69f6a83 |
| ENCFF926ZHI.tabix.bed.gz | 1.27 MB | 67f58c19ff98535a0c4734a2edd860af |
| ENCFF926ZHI.tabix.bed.gz.dvc | 107.0 B | 266ca99d66803c3cac5ec66a7d99ee45 |
| ENCFF926ZHI.tabix.bed.gz.tbi | 274.69 KB | f97e75c5ddf72c1719b3610ddae70452 |
| ENCFF926ZHI.tabix.bed.gz.tbi.dvc | 110.0 B | 4237b4add667875350da5cb1aebe9602 |
| genomic_resource.yaml | 3.65 KB | bdb3559fe2d7eaac04aab27ef1fc47bc |
| genomic_resource_original.yaml | 3.54 KB | 52569145d61c750c3a97e000dfbde69d |
| statistics/ |