Resource
| Id | Histone_ChIP-seq/ENCSR177QXA |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR177QXA [biosample_summary="Homo sapiens myoepithelial cell of mammary gland female adult (33 years)" and target="H3K4me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (33 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN041DMA|/analyses/ENCAN041DMA/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed redacted alignments file {ENCFF157ELV|/files/ENCFF157ELV/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 10223891 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR177QXA | float |
Histone_ChIP-seq_ENCSR177QXA |
Histone_ChIP-seq ENCSR177QXA [biosample_summary="Homo sapiens myoepithelial cell of mammary gland female adult (33 years)" and target="H3K4me3"]
|
 |
[2.08, 97.9] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 46842584 | 1.46% | 33499 |
| chr1 | 4672574 | 1.88% | 3306 |
| chr1_KI270712v1_random | 327 | 0.19% | 1 |
| chr1_KI270713v1_random | 1396 | 3.43% | 4 |
| chr1_KI270714v1_random | 281 | 0.67% | 1 |
| chr2 | 3073801 | 1.27% | 2273 |
| chr3 | 2669852 | 1.35% | 1791 |
| chr4 | 1859395 | 0.98% | 1265 |
| chr5 | 2204281 | 1.21% | 1489 |
| chr6 | 2708358 | 1.59% | 1782 |
| chr7 | 2275383 | 1.43% | 1684 |
| chr8 | 1774431 | 1.22% | 1268 |
| chr9 | 1903556 | 1.38% | 1420 |
| chr10 | 1934498 | 1.45% | 1390 |
| chr11 | 2661903 | 1.97% | 1804 |
| chr12 | 2496233 | 1.87% | 1710 |
| chr13 | 883160 | 0.77% | 665 |
| chr14 | 1499034 | 1.40% | 1078 |
| chr14_GL000194v1_random | 251 | 0.13% | 1 |
| chr15 | 1398528 | 1.37% | 1008 |
| chr16 | 1896213 | 2.10% | 1434 |
| chr17 | 2769326 | 3.33% | 2002 |
| chr17_GL000205v2_random | 2472 | 1.33% | 3 |
| chr18 | 821590 | 1.02% | 634 |
| chr19 | 3069187 | 5.24% | 2237 |
| chr20 | 1206620 | 1.87% | 900 |
| chr21 | 512431 | 1.10% | 424 |
| chr22 | 1138301 | 2.24% | 866 |
| chr22_KI270733v1_random | 536 | 0.30% | 2 |
| chrUn_GL000195v1 | 1427 | 0.78% | 3 |
| chrUn_GL000219v1 | 1640 | 0.92% | 1 |
| chrUn_GL000220v1 | 547 | 0.34% | 2 |
| chrX | 1404886 | 0.90% | 1050 |
| chrY | 166 | <0.01% | 1 |
| 3333 contigs with no values (127737852 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 33499 | 165 | 19739 | 1398.33 | 977 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF365TKH.bed.gz | 735.45 KB | 8b4350fc2aee19a9be3c93809cd69bf8 |
| ENCFF365TKH.tabix.bed.gz | 352.01 KB | 1b3055d039c7ec933cca1c284f11631c |
| ENCFF365TKH.tabix.bed.gz.tbi | 175.35 KB | aff356c6aec2b7af939152eeb5d92e76 |
| genomic_resource.yaml | 2.05 KB | 71832b5abc1de4c2869b1afc5383306d |
| statistics/ |