Resource

Id Histone_ChIP-seq/ENCSR175HIVcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR175HIV [biosample_summary="Homo sapiens myoepithelial cell of mammary gland female adult (33 years)" and target="H3K9ac"]
Description
Labels
  • accession: ENCSR175HIV
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0002324/
  • biosample_summary: Homo sapiens myoepithelial cell of mammary gland female adult (33 years)
  • date_created: 2015-09-15T20:27:47.417057+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR175HIV
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (33 years)
  • status: released
  • submitter_comment:
  • target: H3K9ac

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR175HIV float

Histone_ChIP-seq_ENCSR175HIV
Histone_ChIP-seq ENCSR175HIV [biosample_summary="Homo sapiens myoepithelial cell of mammary gland female adult (33 years)" and target="H3K9ac"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR175HIV [1.44, 20.2]
n
21,338,503
mean
4.92
sd
1.63

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 213385030.66% 64927
chr1 2121979 0.85% 6476
chr2 1469455 0.61% 4603
chr3 1372748 0.69% 4142
chr4 891708 0.47% 2660
chr5 1070772 0.59% 3217
chr6 1088639 0.64% 3304
chr7 1028248 0.65% 3135
chr8 790307 0.54% 2420
chr9 1000904 0.72% 3033
chr10 965565 0.72% 3048
chr11 1254129 0.93% 3785
chr12 1055548 0.79% 3099
chr13 444943 0.39% 1379
chr14 686154 0.64% 2109
chr15 682308 0.67% 2161
chr16 926770 1.03% 2719
chr17 1126585 1.35% 3408
chr18 392222 0.49% 1252
chr19 1179668 2.01% 3103
chr20 641205 0.99% 2035
chr21 207559 0.44% 645
chr22 613269 1.21% 1925
chrX 327818 0.21% 1269
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 64927 105 3898 328.65 252
global segment-length histogram

Files

Filename Size md5
ENCFF807QVF.bed.gz 1.06 MB f62a621921bcc83ee123d648f9e10167
ENCFF807QVF.tabix.bed.gz 586.88 KB 7fee8f62f307f47046ff8e4f1f2b2d93
ENCFF807QVF.tabix.bed.gz.tbi 289.7 KB 4bee4b29e2c32e5a1e158095bd96a0bf
genomic_resource.yaml 2.05 KB 37c1a89d03f090e42edf2ca64763c760
statistics/