Histone_ChIP-seq_ENCSR175ABH
Histone_ChIP-seq ENCSR175ABH [biosample_summary="Homo sapiens heart right ventricle tissue male adult (55 years)" and target="H3K27ac"]
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| Id: | Histone_ChIP-seq/ENCSR175ABH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR175ABH [biosamplesummary="Homo sapiens heart right ventricle tissue male adult (55 years)" and target="H3K27ac"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (55 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN974TVP|/analyses/ENCAN974TVP/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: Processed alignments file {ENCFF035GMN|/files/ENCFF035GMN/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline has 13572357 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF035GMN|/files/ENCFF035GMN/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF035GMN|/files/ENCFF035GMN/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.25. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR175ABH | float |
Histone_ChIP-seq_ENCSR175ABH |
Histone_ChIP-seq ENCSR175ABH [biosample_summary="Homo sapiens heart right ventricle tissue male adult (55 years)" and target="H3K27ac"]
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[2.16, 97.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF219NRR.bed.gz | 1.79 MB | 8945fc114bc26e83b276dd75361b58b8 |
| ENCFF219NRR.bed.gz.dvc | 101.0 B | 4eb2bf16298aefcd7d8a843f057fe1a0 |
| ENCFF219NRR.tabix.bed.gz | 819.1 KB | 8b91fb4a882243bdcefb456d9b82ff1f |
| ENCFF219NRR.tabix.bed.gz.dvc | 106.0 B | 83e638f526dcc8eaa24d19aa4c845ad3 |
| ENCFF219NRR.tabix.bed.gz.tbi | 243.88 KB | aff462ba85ca3633b2a3215e6447b5aa |
| ENCFF219NRR.tabix.bed.gz.tbi.dvc | 110.0 B | 593069c883ea55f2314c1180a9256d19 |
| genomic_resource.yaml | 3.28 KB | f36a1d638be4cba8b8b2dbf358da5662 |
| genomic_resource_original.yaml | 3.13 KB | 4a7a562b88449c724bea6fdb334d18dc |
| statistics/ |