Histone_ChIP-seq_ENCSR174GMQ
Histone_ChIP-seq ENCSR174GMQ [biosample_summary="Homo sapiens heart right ventricle tissue male adult (69 years)" and target="H3K27ac"]
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| Id: | Histone_ChIP-seq/ENCSR174GMQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR174GMQ [biosamplesummary="Homo sapiens heart right ventricle tissue male adult (69 years)" and target="H3K27ac"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (69 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN881MVI|/analyses/ENCAN881MVI/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF337BMH|/files/ENCFF337BMH/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF337BMH|/files/ENCFF337BMH/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.21. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR174GMQ | float |
Histone_ChIP-seq_ENCSR174GMQ |
Histone_ChIP-seq ENCSR174GMQ [biosample_summary="Homo sapiens heart right ventricle tissue male adult (69 years)" and target="H3K27ac"]
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[1.82, 87.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF442MTS.bed.gz | 1.74 MB | f200337184e235c36d6abd6e4cbb4315 |
| ENCFF442MTS.bed.gz.dvc | 101.0 B | 2301ce15502f0066ab1b040fd173fc31 |
| ENCFF442MTS.tabix.bed.gz | 783.12 KB | 074bbce67e131df4b8c6478ffbc3ace3 |
| ENCFF442MTS.tabix.bed.gz.dvc | 106.0 B | a66a7d197c6d13f9b101d7cdff1a43cc |
| ENCFF442MTS.tabix.bed.gz.tbi | 242.48 KB | df38f71a73929f98a1ef772b456bada2 |
| ENCFF442MTS.tabix.bed.gz.tbi.dvc | 110.0 B | c9a656ca496b66fe848c1eeba7e5493a |
| genomic_resource.yaml | 2.79 KB | f66e6632d95dbccb8ea0792ca7240b1b |
| genomic_resource_original.yaml | 2.65 KB | cd4e0134c981522fae06e094da40471e |
| statistics/ |