Resource
| Id | Histone_ChIP-seq/ENCSR174GMQ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR174GMQ [biosample_summary="Homo sapiens heart right ventricle tissue male adult (69 years)" and target="H3K27ac"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (69 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN881MVI|/analyses/ENCAN881MVI/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF337BMH|/files/ENCFF337BMH/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF337BMH|/files/ENCFF337BMH/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.21. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR174GMQ | float |
Histone_ChIP-seq_ENCSR174GMQ |
Histone_ChIP-seq ENCSR174GMQ [biosample_summary="Homo sapiens heart right ventricle tissue male adult (69 years)" and target="H3K27ac"]
|
 |
[1.82, 87.9] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 99552375 | 3.09% | 71409 |
| chr1 | 9949203 | 4.00% | 6856 |
| chr2 | 7486077 | 3.09% | 5604 |
| chr3 | 6776707 | 3.42% | 4727 |
| chr4 | 4170552 | 2.19% | 3134 |
| chr5 | 5476716 | 3.02% | 3833 |
| chr6 | 5351002 | 3.13% | 4015 |
| chr7 | 4362408 | 2.74% | 3234 |
| chr8 | 4126363 | 2.84% | 3167 |
| chr9 | 4253168 | 3.07% | 3071 |
| chr10 | 5399899 | 4.04% | 3782 |
| chr11 | 5086196 | 3.77% | 3639 |
| chr12 | 5242783 | 3.93% | 3517 |
| chr13 | 2358497 | 2.06% | 1783 |
| chr14 | 3046504 | 2.85% | 2189 |
| chr15 | 3612450 | 3.54% | 2620 |
| chr16 | 3384355 | 3.75% | 2492 |
| chr17 | 5174696 | 6.22% | 3482 |
| chr18 | 2115714 | 2.63% | 1577 |
| chr19 | 3939863 | 6.72% | 2676 |
| chr20 | 2666631 | 4.14% | 1915 |
| chr21 | 990274 | 2.12% | 782 |
| chr22 | 2432294 | 4.79% | 1616 |
| chrX | 2091583 | 1.34% | 1650 |
| chrY | 58440 | 0.10% | 48 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 71409 | 200 | 47867 | 1394.12 | 942 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF442MTS.bed.gz | 1.74 MB | f200337184e235c36d6abd6e4cbb4315 |
| ENCFF442MTS.tabix.bed.gz | 783.12 KB | 074bbce67e131df4b8c6478ffbc3ace3 |
| ENCFF442MTS.tabix.bed.gz.tbi | 242.48 KB | df38f71a73929f98a1ef772b456bada2 |
| genomic_resource.yaml | 2.79 KB | f66e6632d95dbccb8ea0792ca7240b1b |
| statistics/ |