Resource
| Id | Histone_ChIP-seq/ENCSR173ZMH |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR173ZMH [biosample_summary="Homo sapiens iPS DF 6.9" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN409YCQ|/analyses/ENCAN409YCQ/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN409YCQ|/analyses/ENCAN409YCQ/} has in progress subobject document {c1f4b1e5-7d32-48da-aed1-1f3c76f6a150|/documents/c1f4b1e5-7d32-48da-aed1-1f3c76f6a150/} audit_not_compliant: Processed alignments file {ENCFF316QLK|/files/ENCFF316QLK/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 28716455 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF542QXH|/files/ENCFF542QXH/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 18642579 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR173ZMH | float |
Histone_ChIP-seq_ENCSR173ZMH |
Histone_ChIP-seq ENCSR173ZMH [biosample_summary="Homo sapiens iPS DF 6.9" and target="H3K36me3"]
|
 |
[1.63, 15.1] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 26852357 | 0.83% | 56153 |
| chr1 | 2747492 | 1.10% | 5838 |
| chr2 | 1493374 | 0.62% | 3522 |
| chr3 | 1361514 | 0.69% | 2948 |
| chr4 | 790297 | 0.42% | 1886 |
| chr5 | 1197773 | 0.66% | 2676 |
| chr6 | 1080680 | 0.63% | 2348 |
| chr7 | 1280876 | 0.80% | 2708 |
| chr8 | 794575 | 0.55% | 1757 |
| chr9 | 1177228 | 0.85% | 2475 |
| chr10 | 910452 | 0.68% | 2089 |
| chr11 | 1454181 | 1.08% | 3031 |
| chr12 | 1556225 | 1.17% | 3213 |
| chr13 | 366728 | 0.32% | 957 |
| chr14 | 740276 | 0.69% | 1656 |
| chr15 | 828969 | 0.81% | 1783 |
| chr16 | 1593924 | 1.76% | 3075 |
| chr17 | 1852252 | 2.22% | 3660 |
| chr18 | 283847 | 0.35% | 715 |
| chr19 | 2646897 | 4.52% | 4503 |
| chr20 | 943958 | 1.46% | 1883 |
| chr21 | 368633 | 0.79% | 762 |
| chr22 | 975934 | 1.92% | 1819 |
| chrX | 394961 | 0.25% | 819 |
| chrY | 11311 | 0.02% | 30 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 56153 | 178 | 15939 | 478.2 | 363 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF466LNY.bed.gz | 1.14 MB | 7a04b1e7d47d19bac05614abb6dcebab |
| ENCFF466LNY.tabix.bed.gz | 566.72 KB | 368e79fa9df5e6f556c2195fea7a9e85 |
| ENCFF466LNY.tabix.bed.gz.tbi | 137.73 KB | 5af65daeda49ecf5fa7144f3de565ffd |
| genomic_resource.yaml | 2.63 KB | 57acb61618c6ad3e47705f97826eb7a2 |
| statistics/ |