Resource

Id Histone_ChIP-seq/ENCSR169BGFcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR169BGF [biosample_summary="Homo sapiens neuronal stem cell originated from H9" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR169BGF
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/in_vitro_differentiated_cells_CL_0000047/
  • biosample_summary: Homo sapiens neuronal stem cell originated from H9
  • date_created: 2015-09-15T19:47:04.926449+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR169BGF
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (5 days)
  • status: released
  • submitter_comment: As of July 10th, 2017, this control and all its downstream experiments must be rerun to correct for proper replicate structure. For experiment ENCSR169BGF, there is only a replicate 2.
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR169BGF float

Histone_ChIP-seq_ENCSR169BGF
Histone_ChIP-seq ENCSR169BGF [biosample_summary="Homo sapiens neuronal stem cell originated from H9" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR169BGF [1.83, 18.1]
n
66,121,038
mean
5.72
sd
1.92

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 661210382.06% 120879
chr1 6273715 2.52% 11031
chr2 5713948 2.36% 10465
chr3 4299397 2.17% 7948
chr4 2908567 1.53% 5725
chr5 4109472 2.26% 7473
chr6 3968016 2.32% 7320
chr7 3300343 2.07% 6181
chr8 2891076 1.99% 5496
chr9 3075122 2.22% 5410
chr10 2930179 2.19% 5368
chr11 3667981 2.72% 6437
chr12 3286749 2.47% 5975
chr13 1972506 1.72% 3791
chr14 2002945 1.87% 3607
chr15 2081685 2.04% 3741
chr16 2386913 2.64% 4163
chr17 3142098 3.77% 5426
chr18 1561596 1.94% 2975
chr19 1718282 2.93% 3292
chr20 1740736 2.70% 3095
chr21 622920 1.33% 1196
chr22 1589680 3.13% 2729
chrX 877112 0.56% 2035
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 120879 125 8678 547 418
global segment-length histogram

Files

Filename Size md5
ENCFF588LNM.bed.gz 2.49 MB ffeb9519039d32f08011dddd4be628fa
ENCFF588LNM.tabix.bed.gz 1.19 MB dd1c70fe2da20937703014e9e4873ecb
ENCFF588LNM.tabix.bed.gz.tbi 363.09 KB 806c89adfd072caf60c3c769d62b56b7
genomic_resource.yaml 2.4 KB 69b8f8452ac5d94ac1d33bfd2d376c37
statistics/