type: position_score
table:
  filename: ENCFF588LNM.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: Histone_ChIP-seq_ENCSR169BGF
  column_index: 3
  type: float
  desc: signal
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'ChIP-seq ENCSR169BGF [TISSUE: Homo sapiens neuronal stem cell originated
    from H9, TARGET: H3K4me1]'
  description: '**status**: released


    **biological\_replicates**: Rep 2


    **summary**: female embryo (5 days)


    **output\_type**: pseudoreplicated peaks


    **audit\_internal\_action**: Released analysis {ENCAN148FEF|/analyses/ENCAN148FEF/}
    has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/}


    **audit\_internal\_action**: Released analysis {ENCAN148FEF|/analyses/ENCAN148FEF/}
    has in progress subobject document {1394531c-3edd-40fe-a768-02190ec0dc57|/documents/1394531c-3edd-40fe-a768-02190ec0dc57/}


    **audit\_not\_compliant**: Processed alignments file {ENCFF800MEZ|/files/ENCFF800MEZ/}
    processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 25995841 usable fragments.
    The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting
    H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments.
    The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE
    ChIP-seq data standards|/data-standards/chip-seq/})'
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR169BGF
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: female embryo (5 days)
    biosample_summary: Homo sapiens neuronal stem cell originated from H9
    replication_type: unreplicated
    biosample_ontology: /biosample-types/in_vitro_differentiated_cells_CL_0000047/
    perturbed: false
    doi: 10.17989/ENCSR169BGF
    date_created: '2015-09-15T19:47:04.926449+00:00'
    date_released: '2013-07-31'
    submitter_comment: As of July 10th, 2017, this control and all its downstream
      experiments must be rerun to correct for proper replicate structure. For experiment
      ENCSR169BGF, there is only a replicate 2.
    target: H3K4me1
