Resource

Id Histone_ChIP-seq/ENCSR168QMCcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR168QMC [biosample_summary="Homo sapiens BLaER1 9 hours after the sample\ \ was treated with 100 nM 17\u03B2-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL\ \ CSF1" and target="H3K9me3"]
Description
Labels
  • accession: ENCSR168QMC
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0030018/
  • biosample_summary: Homo sapiens BLaER1 9 hours after the sample was treated with 100 nM 17β-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1
  • date_created: 2022-01-27T21:50:38.519872+00:00
  • date_released: 2022-05-10
  • doi: 10.17989/ENCSR168QMC
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: 9 hours after the sample was treated with 100 nM 17β-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1
  • status: released
  • submitter_comment:
  • target: H3K9me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR168QMC float

Histone_ChIP-seq_ENCSR168QMC
Histone_ChIP-seq ENCSR168QMC [biosample_summary="Homo sapiens BLaER1 9 hours after the sample\ \ was treated with 100 nM 17\u03B2-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL\ \ CSF1" and target="H3K9me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR168QMC [1.43, 24.3]
n
168,636,100
mean
5.81
sd
3.12

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1686361005.24% 217688
chr1 11640392 4.68% 15193
chr1_KI270706v1_random 16545 9.45% 25
chr1_KI270707v1_random 3853 12.03% 7
chr1_KI270708v1_random 28538 22.35% 42
chr1_KI270709v1_random 22050 32.98% 20
chr1_KI270710v1_random 1735 4.32% 2
chr1_KI270712v1_random 4685 2.66% 4
chr1_KI270713v1_random 658 1.61% 1
chr1_KI270714v1_random 1595 3.82% 2
chr2 12958816 5.35% 17331
chr2_KI270716v1_random 8191 5.33% 4
chr3 10491392 5.29% 14552
chr3_GL000221v1_random 6022 3.88% 13
chr4 9369971 4.93% 12859
chr4_GL000008v2_random 12312 5.87% 17
chr5 10524230 5.80% 14002
chr5_GL000208v1_random 4080 4.40% 7
chr6 8456008 4.95% 11968
chr7 10355764 6.50% 12931
chr8 10754060 7.41% 13062
chr9 6246814 4.51% 8443
chr9_KI270718v1_random 516 1.36% 2
chr9_KI270719v1_random 5779 3.27% 9
chr9_KI270720v1_random 425 1.09% 1
chr10 8140223 6.08% 10507
chr11 6502130 4.81% 8515
chr12 7674853 5.76% 9482
chr13 5258301 4.60% 7579
chr14 4928588 4.60% 6525
chr14_GL000009v2_random 12568 6.23% 26
chr14_GL000194v1_random 15331 8.01% 17
chr14_GL000225v1_random 128990 61.08% 130
chr14_KI270722v1_random 26824 13.82% 47
chr14_KI270723v1_random 6879 18.05% 8
chr14_KI270724v1_random 5225 13.21% 4
chr14_KI270725v1_random 5322 3.08% 6
chr14_KI270726v1_random 302 0.69% 1
chr15 4521826 4.43% 5962
chr15_KI270727v1_random 1151 0.26% 3
chr16 4298695 4.76% 5167
chr16_KI270728v1_random 56556 3.02% 72
chr17 3813021 4.58% 4601
chr17_GL000205v2_random 11645 6.27% 19
chr17_KI270729v1_random 208731 74.32% 39
chr17_KI270730v1_random 34864 30.98% 23
chr18 3858025 4.80% 5271
chr19 8949214 15.27% 6759
chr20 3388684 5.26% 4348
chr21 2795684 5.99% 3419
chr22 1885109 3.71% 2318
chr22_KI270731v1_random 661 0.44% 2
chr22_KI270732v1_random 4568 11.00% 4
chr22_KI270733v1_random 24601 13.68% 38
chr22_KI270735v1_random 6069 14.18% 5
chr22_KI270736v1_random 139105 76.46% 40
chr22_KI270737v1_random 63348 61.01% 57
chr22_KI270738v1_random 57985 58.35% 23
chr22_KI270739v1_random 273 0.37% 1
chrUn_GL000195v1 1683 0.92% 5
chrUn_GL000213v1 4286 2.61% 8
chrUn_GL000214v1 15116 10.98% 32
chrUn_GL000216v2 120650 68.32% 52
chrUn_GL000218v1 5378 3.34% 10
chrUn_GL000219v1 14871 8.30% 17
chrUn_GL000220v1 10885 6.73% 14
chrUn_GL000224v1 95711 53.26% 69
chrUn_KI270310v1 260 21.65% 1
chrUn_KI270320v1 274 6.20% 1
chrUn_KI270322v1 1876 8.74% 5
chrUn_KI270330v1 730 44.19% 2
chrUn_KI270333v1 262 9.71% 1
chrUn_KI270364v1 280 9.81% 1
chrUn_KI270418v1 415 19.35% 1
chrUn_KI270420v1 445 19.17% 1
chrUn_KI270435v1 20860 22.43% 38
chrUn_KI270438v1 75206 66.85% 24
chrUn_KI270442v1 138607 35.35% 77
chrUn_KI270465v1 613 34.55% 1
chrUn_KI270468v1 309 7.62% 1
chrUn_KI270507v1 278 5.19% 1
chrUn_KI270508v1 1413 72.42% 3
chrUn_KI270509v1 1196 51.60% 2
chrUn_KI270510v1 344 14.24% 1
chrUn_KI270512v1 9863 43.47% 14
chrUn_KI270515v1 537 8.44% 2
chrUn_KI270516v1 660 50.77% 1
chrUn_KI270517v1 1554 47.77% 4
chrUn_KI270518v1 995 45.52% 2
chrUn_KI270519v1 45673 33.07% 53
chrUn_KI270521v1 290 3.79% 1
chrUn_KI270529v1 396 20.85% 1
chrUn_KI270538v1 2590 2.84% 6
chrUn_KI270579v1 255 0.82% 1
chrUn_KI270580v1 1270 81.78% 3
chrUn_KI270583v1 264 18.86% 1
chrUn_KI270584v1 2320 51.41% 3
chrUn_KI270589v1 4360 9.80% 5
chrUn_KI270590v1 2316 49.43% 4
chrUn_KI270591v1 1431 24.69% 3
chrUn_KI270741v1 4373 2.78% 10
chrUn_KI270742v1 2841 1.52% 7
chrUn_KI270743v1 9518 4.52% 20
chrUn_KI270744v1 22964 13.63% 25
chrUn_KI270745v1 318 0.76% 1
chrUn_KI270746v1 602 0.91% 1
chrUn_KI270747v1 4286 2.16% 6
chrUn_KI270748v1 250 0.27% 1
chrUn_KI270749v1 5118 3.22% 6
chrUn_KI270750v1 1965 1.32% 4
chrUn_KI270751v1 11924 7.91% 18
chrUn_KI270753v1 4712 7.49% 8
chrUn_KI270754v1 20123 50.07% 16
chrUn_KI270755v1 571 1.55% 2
chrUn_KI270756v1 78241 98.31% 12
chrUn_KI270757v1 9624 13.51% 13
chrX 9849535 6.31% 15148
chrY 282631 0.49% 403
3249 contigs with no values (118406142 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 217688 250 57361 774.67 460
global segment-length histogram

Files

Filename Size md5
ENCFF386EDX.bed.gz 4.17 MB 094079a12711aff014cf6b2eb7a98be6
ENCFF386EDX.tabix.bed.gz 2.06 MB 53b3342b76d0d77d9771e288956039f0
ENCFF386EDX.tabix.bed.gz.tbi 521.91 KB 2d1e4a8d960423ae18915ff945703c40
genomic_resource.yaml 3.11 KB 41bed05ecbf0e03c2291624b831fbbac
statistics/