Resource

Id Histone_ChIP-seq/ENCSR168PQIcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR168PQI [biosample_summary="Homo sapiens stomach smooth muscle tissue male adult (59 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR168PQI
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0004222/
  • biosample_summary: Homo sapiens stomach smooth muscle tissue male adult (59 years)
  • date_created: 2015-09-15T19:52:34.845603+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR168PQI
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (59 years)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR168PQI float

Histone_ChIP-seq_ENCSR168PQI
Histone_ChIP-seq ENCSR168PQI [biosample_summary="Homo sapiens stomach smooth muscle tissue male adult (59 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR168PQI [1.88, 39.8]
n
41,406,226
mean
11.3
sd
6.08

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 414062261.29% 43252
chr1 4059266 1.63% 4113
chr2 2904491 1.20% 3035
chr3 2551148 1.29% 2601
chr4 1861129 0.98% 1911
chr5 2126271 1.17% 2162
chr6 2440222 1.43% 2435
chr7 1988987 1.25% 2110
chr8 1600361 1.10% 1739
chr9 1757523 1.27% 1860
chr10 1854959 1.39% 2037
chr11 2173647 1.61% 2154
chr12 2237775 1.68% 2290
chr13 964664 0.84% 1055
chr14 1357285 1.27% 1379
chr15 1422340 1.39% 1484
chr16 1469070 1.63% 1544
chr17 2105027 2.53% 2188
chr18 722628 0.90% 795
chr19 2469889 4.21% 2715
chr20 999628 1.55% 1056
chr21 398228 0.85% 480
chr22 802858 1.58% 861
chrX 1099989 0.70% 1214
chrY 38841 0.07% 34
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 43252 210 14676 957.33 684
global segment-length histogram

Files

Filename Size md5
ENCFF127EBG.bed.gz 1.01 MB 64e2373f40d9f71944d9f5a5d9bfc918
ENCFF127EBG.tabix.bed.gz 469.97 KB ff0a94a468b653153600e2106edf0439
ENCFF127EBG.tabix.bed.gz.tbi 201.89 KB 9a55a132b17127b62affcd77ea4791f0
genomic_resource.yaml 1.53 KB 76224ad5ac71547c372f52efaa264b8d
statistics/