Resource
| Id | Histone_ChIP-seq/ENCSR166VXF |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR166VXF [biosample_summary="Homo sapiens tibial artery tissue female adult (53 years)" and target="H3K9me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (53 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN012DNB|/analyses/ENCAN012DNB/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed unfiltered alignments file {ENCFF659PCG|/files/ENCFF659PCG/} processed by ChIP-seq ENCODE3 hg19 pipeline has 44761604 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR166VXF | float |
Histone_ChIP-seq_ENCSR166VXF |
Histone_ChIP-seq ENCSR166VXF [biosample_summary="Homo sapiens tibial artery tissue female adult (53 years)" and target="H3K9me3"]
|
 |
[1.42, 16.9] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 43586427 | 1.35% | 43393 |
| chr1 | 2772453 | 1.11% | 3077 |
| chr2 | 2776879 | 1.15% | 3228 |
| chr3 | 2526985 | 1.27% | 2822 |
| chr4 | 2381638 | 1.25% | 2658 |
| chr5 | 3039052 | 1.67% | 2898 |
| chr6 | 2095300 | 1.23% | 2451 |
| chr7 | 2586605 | 1.62% | 2569 |
| chr8 | 1923993 | 1.33% | 2140 |
| chr9 | 1646556 | 1.19% | 1692 |
| chr10 | 1976869 | 1.48% | 2038 |
| chr11 | 1889411 | 1.40% | 1897 |
| chr12 | 2195063 | 1.65% | 2124 |
| chr13 | 939156 | 0.82% | 1109 |
| chr14 | 1044969 | 0.98% | 1209 |
| chr15 | 1176283 | 1.15% | 1226 |
| chr16 | 1189463 | 1.32% | 1093 |
| chr17 | 674672 | 0.81% | 729 |
| chr18 | 734450 | 0.91% | 855 |
| chr19 | 5615179 | 9.58% | 2756 |
| chr20 | 636261 | 0.99% | 748 |
| chr21 | 591487 | 1.27% | 574 |
| chr22 | 424470 | 0.84% | 455 |
| chrX | 2704868 | 1.73% | 2987 |
| chrY | 44365 | 0.08% | 58 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 43393 | 220 | 56840 | 1004.46 | 730 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF383DCB.bed.gz | 843.93 KB | 0c7ba1674d9650fd02effe3ffd547e1f |
| ENCFF383DCB.tabix.bed.gz | 433.32 KB | 58f3dfe17aa0e56aa4753c10f82db826 |
| ENCFF383DCB.tabix.bed.gz.tbi | 211.51 KB | d8e29b6b6056301cb192b0cccab863c6 |
| genomic_resource.yaml | 1.99 KB | 5424cbc2d0e3cc4a2fbd4856f6bc2d65 |
| statistics/ |