Histone_ChIP-seq_ENCSR165BJO
Histone_ChIP-seq ENCSR165BJO [biosample_summary="Homo sapiens heart left ventricle tissue male adult (43 years)" and target="H3K27me3"]
×
| Id: | Histone_ChIP-seq/ENCSR165BJO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR165BJO [biosamplesummary="Homo sapiens heart left ventricle tissue male adult (43 years)" and target="H3K27me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (43 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN086GII|/analyses/ENCAN086GII/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF482IDO|/files/ENCFF482IDO/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF482IDO|/files/ENCFF482IDO/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.79. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR165BJO | float |
Histone_ChIP-seq_ENCSR165BJO |
Histone_ChIP-seq ENCSR165BJO [biosample_summary="Homo sapiens heart left ventricle tissue male adult (43 years)" and target="H3K27me3"]
|
|
[1.64, 15.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF002RAB.bed.gz | 1.09 MB | d1421535e39b87df665b1c7f299c54d2 |
| ENCFF002RAB.bed.gz.dvc | 101.0 B | d880e2f077f4ed288ec6e23d3cd58e0e |
| ENCFF002RAB.tabix.bed.gz | 580.05 KB | c5be91ec4480d583078ee1f05180d356 |
| ENCFF002RAB.tabix.bed.gz.dvc | 106.0 B | a697f9d45611e80df5314208fcaad48e |
| ENCFF002RAB.tabix.bed.gz.tbi | 166.21 KB | 96f5cf18dca05ac5ace18c77feb29087 |
| ENCFF002RAB.tabix.bed.gz.tbi.dvc | 110.0 B | 7d78172e516414757f37fb87dd90e16e |
| genomic_resource.yaml | 2.79 KB | 44810a39411c3250ea736174978c29ff |
| genomic_resource_original.yaml | 2.65 KB | 4455a31973ed11ad0ecde119e8419a82 |
| statistics/ |