Resource
| Id | Histone_ChIP-seq/ENCSR165BJO |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR165BJO [biosample_summary="Homo sapiens heart left ventricle tissue male adult (43 years)" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (43 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN086GII|/analyses/ENCAN086GII/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF482IDO|/files/ENCFF482IDO/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF482IDO|/files/ENCFF482IDO/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.79. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR165BJO | float |
Histone_ChIP-seq_ENCSR165BJO |
Histone_ChIP-seq ENCSR165BJO [biosample_summary="Homo sapiens heart left ventricle tissue male adult (43 years)" and target="H3K27me3"]
|
 |
[1.64, 15.7] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 69869521 | 2.17% | 61205 |
| chr1 | 7288027 | 2.93% | 6317 |
| chr2 | 4959552 | 2.05% | 4428 |
| chr3 | 2393130 | 1.21% | 2295 |
| chr4 | 2328926 | 1.22% | 1919 |
| chr5 | 3367377 | 1.85% | 2733 |
| chr6 | 3878444 | 2.27% | 3090 |
| chr7 | 3555468 | 2.23% | 3009 |
| chr8 | 2932648 | 2.02% | 2665 |
| chr9 | 2743425 | 1.98% | 2417 |
| chr10 | 3864163 | 2.89% | 3533 |
| chr11 | 3365779 | 2.49% | 3065 |
| chr12 | 3595639 | 2.70% | 3273 |
| chr13 | 1593794 | 1.39% | 1401 |
| chr14 | 2538233 | 2.37% | 2290 |
| chr15 | 2118870 | 2.08% | 2052 |
| chr16 | 2710541 | 3.00% | 2577 |
| chr17 | 4294212 | 5.16% | 3379 |
| chr18 | 1180405 | 1.47% | 1187 |
| chr19 | 4104935 | 7.00% | 3335 |
| chr20 | 3601450 | 5.59% | 3129 |
| chr21 | 770589 | 1.65% | 704 |
| chr22 | 2343384 | 4.61% | 2120 |
| chrX | 333102 | 0.21% | 276 |
| chrY | 7428 | 0.01% | 11 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 61205 | 220 | 65791 | 1141.57 | 748 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF002RAB.bed.gz | 1.09 MB | d1421535e39b87df665b1c7f299c54d2 |
| ENCFF002RAB.tabix.bed.gz | 580.05 KB | c5be91ec4480d583078ee1f05180d356 |
| ENCFF002RAB.tabix.bed.gz.tbi | 166.21 KB | 96f5cf18dca05ac5ace18c77feb29087 |
| genomic_resource.yaml | 2.79 KB | 44810a39411c3250ea736174978c29ff |
| statistics/ |