Resource
| Id | Histone_ChIP-seq/ENCSR164RFI |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR164RFI [biosample_summary="Homo sapiens IMR-90" and target="H4K91ac"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN302SMR|/analyses/ENCAN302SMR/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF113DJS|/files/ENCFF113DJS/} processed by ChIP-seq ENCODE3 hg19 pipeline has 8182412 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H4K91ac-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF070MIB|/files/ENCFF070MIB/} processed by ChIP-seq ENCODE3 hg19 pipeline has 11909487 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H4K91ac-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR164RFI | float |
Histone_ChIP-seq_ENCSR164RFI |
Histone_ChIP-seq ENCSR164RFI [biosample_summary="Homo sapiens IMR-90" and target="H4K91ac"]
|
 |
[1.83, 56.6] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 65568494 | 2.04% | 164442 |
| chr1 | 5903468 | 2.37% | 14653 |
| chr2 | 6201684 | 2.56% | 15231 |
| chr3 | 4305116 | 2.17% | 10852 |
| chr4 | 2757564 | 1.45% | 7815 |
| chr5 | 3973762 | 2.19% | 9989 |
| chr6 | 3686683 | 2.16% | 9950 |
| chr7 | 3101019 | 1.95% | 8011 |
| chr8 | 3132793 | 2.16% | 8221 |
| chr9 | 3054763 | 2.21% | 7326 |
| chr10 | 3073469 | 2.30% | 7694 |
| chr11 | 3926648 | 2.91% | 9432 |
| chr12 | 3132476 | 2.35% | 7961 |
| chr13 | 1649580 | 1.44% | 4493 |
| chr14 | 2054139 | 1.92% | 5014 |
| chr15 | 2536919 | 2.49% | 6042 |
| chr16 | 2124386 | 2.35% | 4803 |
| chr17 | 3033543 | 3.64% | 6922 |
| chr18 | 1428885 | 1.78% | 3879 |
| chr19 | 1652593 | 2.82% | 4137 |
| chr20 | 1693139 | 2.63% | 4029 |
| chr21 | 973769 | 2.08% | 2440 |
| chr22 | 1292122 | 2.54% | 2932 |
| chrX | 879974 | 0.56% | 2616 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 164442 | 115 | 9598 | 398.73 | 293 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF586JXD.bed.gz | 3.76 MB | 89ab2352bf7783eb8632af2b646b732e |
| ENCFF586JXD.tabix.bed.gz | 1.65 MB | 353fb0c57f5e76819f7135b89db86846 |
| ENCFF586JXD.tabix.bed.gz.tbi | 291.3 KB | 8b23e8f5ac2061b0fd204b657405eaa8 |
| genomic_resource.yaml | 2.36 KB | 02851600a1d0c99c94b77494f85329fe |
| statistics/ |