Histone_ChIP-seq_ENCSR161XBV
Histone_ChIP-seq ENCSR161XBV [biosample_summary="Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell" and target="H3K4me3"]
×
| Id: | Histone_ChIP-seq/ENCSR161XBV |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR161XBV [biosamplesummary="Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN065IZU|/analyses/ENCAN065IZU/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF758IRK|/files/ENCFF758IRK/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF758IRK|/files/ENCFF758IRK/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.66. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR161XBV | float |
Histone_ChIP-seq_ENCSR161XBV |
Histone_ChIP-seq ENCSR161XBV [biosample_summary="Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell" and target="H3K4me3"]
|
|
[1.58, 38.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF434YII.bed.gz | 882.76 KB | 4db541e14133026795ed9528719014e6 |
| ENCFF434YII.bed.gz.dvc | 100.0 B | 62afe6f9e113c51500eace2bb31551f8 |
| ENCFF434YII.tabix.bed.gz | 376.55 KB | e21150792ae77a9ee8e074b293b5b679 |
| ENCFF434YII.tabix.bed.gz.dvc | 106.0 B | 0f4e2b6bdc63d786b13e748d26a0bba9 |
| ENCFF434YII.tabix.bed.gz.tbi | 158.71 KB | 2fe0cf2f491aa82fa3f3294119ef2212 |
| ENCFF434YII.tabix.bed.gz.tbi.dvc | 110.0 B | 7603f25a76687bd4f4c08d940680846d |
| genomic_resource.yaml | 2.85 KB | 28e3f22a436ab930026838a4de537398 |
| genomic_resource_original.yaml | 2.7 KB | b68cd5e5c1a7f7217bbda046e6476845 |
| statistics/ |