Histone_ChIP-seq_ENCSR159CDJ
Histone_ChIP-seq ENCSR159CDJ [biosample_summary="Homo sapiens Karpas-422" and target="H4K20me1"]
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| Id: | Histone_ChIP-seq/ENCSR159CDJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR159CDJ [biosamplesummary="Homo sapiens Karpas-422" and target="H4K20me1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN728FKO|/analyses/ENCAN728FKO/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN728FKO|/analyses/ENCAN728FKO/} has in progress subobject document {bad21172-6255-4d77-92ed-939ef1aac641|/documents/bad21172-6255-4d77-92ed-939ef1aac641/} audit_not_compliant: Processed alignments file {ENCFF623AYS|/files/ENCFF623AYS/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 22978711 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H4K20me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed alignments file {ENCFF935TGI|/files/ENCFF935TGI/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 35956124 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H4K20me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF623AYS|/files/ENCFF623AYS/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF623AYS|/files/ENCFF623AYS/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.46. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR159CDJ | float |
Histone_ChIP-seq_ENCSR159CDJ |
Histone_ChIP-seq ENCSR159CDJ [biosample_summary="Homo sapiens Karpas-422" and target="H4K20me1"]
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[1.58, 11.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF434NDO.bed.gz | 833.16 KB | 620534fa1d0b0c2088efa1b5b8a43a1e |
| ENCFF434NDO.bed.gz.dvc | 100.0 B | 29595ca103c49e21a6bffb8ea7af36d5 |
| ENCFF434NDO.tabix.bed.gz | 398.61 KB | 3d8f3e5b3a947f9a489235939b0519f1 |
| ENCFF434NDO.tabix.bed.gz.dvc | 106.0 B | f7515193846f578273140aee2eb6c960 |
| ENCFF434NDO.tabix.bed.gz.tbi | 105.78 KB | 36441c60fe0d33be27f1fe0b58e2e421 |
| ENCFF434NDO.tabix.bed.gz.tbi.dvc | 110.0 B | 162a19c5ae06e3c2f2d903bf38e1fcab |
| genomic_resource.yaml | 3.94 KB | e1542563ffa75cfcc198c6e5b295014e |
| genomic_resource_original.yaml | 3.82 KB | 376fa6a85bf8f864c4fdd56736e47d21 |
| statistics/ |