Resource

Id Histone_ChIP-seq/ENCSR158WBGcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR158WBG [biosample_summary="Homo sapiens stomach tissue male adult (54 years)" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR158WBG
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000945/
  • biosample_summary: Homo sapiens stomach tissue male adult (54 years)
  • date_created: 2017-12-06T21:06:56.773002+00:00
  • date_released: 2019-08-01
  • doi: 10.17989/ENCSR158WBG
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (54 years)
  • status: released
  • submitter_comment:
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR158WBG float

Histone_ChIP-seq_ENCSR158WBG
Histone_ChIP-seq ENCSR158WBG [biosample_summary="Homo sapiens stomach tissue male adult (54 years)" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR158WBG [1.55, 8.2]
n
68,852,820
mean
3.53
sd
0.928

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 688528202.14% 69404
chr1 7536685 3.03% 7269
chr2 5085078 2.10% 5387
chr3 4159201 2.10% 4384
chr4 2353581 1.24% 2580
chr5 3250763 1.79% 3488
chr6 3493527 2.05% 3832
chr7 3037804 1.91% 3250
chr8 2642415 1.82% 2853
chr9 3380381 2.44% 3312
chr10 3550588 2.65% 3511
chr11 4016357 2.97% 3849
chr12 3233175 2.43% 3355
chr13 1350423 1.18% 1466
chr14 2476595 2.31% 2471
chr15 2473530 2.43% 2474
chr16 2913970 3.23% 2799
chr17 4375227 5.26% 3964
chr18 1099778 1.37% 1218
chr19 3271249 5.58% 2918
chr20 2157663 3.35% 2086
chr21 778028 1.67% 867
chr22 2032572 4.00% 1840
chrX 183814 0.12% 230
chrY 416 <0.01% 1
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 69404 240 20607 992.06 776
global segment-length histogram

Files

Filename Size md5
ENCFF179PGH.bed.gz 1.48 MB b3849938bb7fc3f4d1cf22388882b66a
ENCFF179PGH.tabix.bed.gz 727.37 KB 95f7f2e67f8f8d00b65ab71e190f86b1
ENCFF179PGH.tabix.bed.gz.tbi 231.08 KB afd1cd2e0ab5e05cff990733badd3a1f
genomic_resource.yaml 1.49 KB c370bb23b3027b68ee1906a018357643
statistics/