Resource
| Id | Histone_ChIP-seq/ENCSR155XXB |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR155XXB [biosample_summary="Homo sapiens OCI-LY1" and target="H3K79me2"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN825UOJ|/analyses/ENCAN825UOJ/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF386EIO|/files/ENCFF386EIO/} processed by ChIP-seq ENCODE3 hg19 pipeline has 25710911 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K79me2-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF546JGH|/files/ENCFF546JGH/} processed by ChIP-seq ENCODE3 hg19 pipeline has 17265198 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K79me2-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR155XXB | float |
Histone_ChIP-seq_ENCSR155XXB |
Histone_ChIP-seq ENCSR155XXB [biosample_summary="Homo sapiens OCI-LY1" and target="H3K79me2"]
|
 |
[1.21, 25.7] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 44066373 | 1.37% | 92160 |
| chr1 | 4035668 | 1.62% | 8520 |
| chr2 | 3701614 | 1.53% | 7432 |
| chr3 | 3543833 | 1.79% | 6974 |
| chr4 | 2268040 | 1.19% | 4717 |
| chr5 | 2634083 | 1.45% | 5255 |
| chr6 | 2354227 | 1.38% | 4832 |
| chr7 | 3038911 | 1.91% | 5658 |
| chr8 | 2100646 | 1.45% | 3800 |
| chr9 | 1732053 | 1.25% | 3789 |
| chr10 | 1907300 | 1.43% | 4356 |
| chr11 | 1839464 | 1.36% | 3925 |
| chr12 | 2031023 | 1.52% | 4443 |
| chr13 | 1162381 | 1.02% | 2089 |
| chr14 | 1533490 | 1.43% | 3266 |
| chr15 | 1598917 | 1.57% | 3586 |
| chr16 | 1268449 | 1.40% | 3136 |
| chr17 | 1756183 | 2.11% | 4062 |
| chr18 | 989968 | 1.23% | 2071 |
| chr19 | 1179479 | 2.01% | 2789 |
| chr20 | 1159684 | 1.80% | 2396 |
| chr21 | 429486 | 0.92% | 773 |
| chr22 | 859366 | 1.69% | 2071 |
| chrX | 880469 | 0.56% | 2074 |
| chrY | 61639 | 0.11% | 146 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 92160 | 80 | 22246 | 478.15 | 270 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF396LMM.bed.gz | 1.92 MB | 38a4e300fcf62a815b21be513f00b1db |
| ENCFF396LMM.tabix.bed.gz | 908.06 KB | c30c74ef858e02e327ff4d0589caa374 |
| ENCFF396LMM.tabix.bed.gz.tbi | 115.97 KB | 74be03c81f28ebae01a00360545ed5e4 |
| genomic_resource.yaml | 2.44 KB | e69428a8f21228fb281bfd7228a9a779 |
| statistics/ |