Resource
| Id | Histone_ChIP-seq/ENCSR155EOT |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR155EOT [biosample_summary="Homo sapiens lower lobe of left lung tissue female adult (59 years)" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (59 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN496TCZ|/analyses/ENCAN496TCZ/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN496TCZ|/analyses/ENCAN496TCZ/} has in progress subobject document {7dac4d91-bcff-437b-bd0a-039dac80dfa0|/documents/7dac4d91-bcff-437b-bd0a-039dac80dfa0/} audit_warning: Processed alignments file {ENCFF796WOA|/files/ENCFF796WOA/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline has 43392419 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR155EOT | float |
Histone_ChIP-seq_ENCSR155EOT |
Histone_ChIP-seq ENCSR155EOT [biosample_summary="Homo sapiens lower lobe of left lung tissue female adult (59 years)" and target="H3K4me1"]
|
 |
[1.83, 13.7] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 151016366 | 4.69% | 128593 |
| chr1 | 15058793 | 6.05% | 12562 |
| chr2 | 12277844 | 5.07% | 10408 |
| chr3 | 10277335 | 5.18% | 8864 |
| chr4 | 5822869 | 3.06% | 5421 |
| chr5 | 7755648 | 4.27% | 6766 |
| chr6 | 8589298 | 5.03% | 7555 |
| chr7 | 7039917 | 4.42% | 6317 |
| chr8 | 6350947 | 4.38% | 5643 |
| chr9 | 6747562 | 4.88% | 5619 |
| chr10 | 7879234 | 5.89% | 6597 |
| chr11 | 8119357 | 6.01% | 6733 |
| chr12 | 7635720 | 5.73% | 6461 |
| chr13 | 3377547 | 2.95% | 3079 |
| chr14 | 5121554 | 4.78% | 4198 |
| chr15 | 5446436 | 5.34% | 4469 |
| chr16 | 5486957 | 6.07% | 4567 |
| chr17 | 8149241 | 9.79% | 6345 |
| chr18 | 2794270 | 3.48% | 2640 |
| chr19 | 5645632 | 9.63% | 4502 |
| chr20 | 4421836 | 6.86% | 3562 |
| chr21 | 1674109 | 3.58% | 1503 |
| chr22 | 3599517 | 7.08% | 2832 |
| chrX | 1744743 | 1.12% | 1950 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 128593 | 210 | 30067 | 1174.37 | 852 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF908UYY.bed.gz | 2.61 MB | db04d53ac381bdc2e1738e33debd7182 |
| ENCFF908UYY.tabix.bed.gz | 1.27 MB | 92271977af25c3510135ce41dc23222c |
| ENCFF908UYY.tabix.bed.gz.tbi | 315.71 KB | d685aa94f1d3f412fde680ffa0cf3c50 |
| genomic_resource.yaml | 2.25 KB | 531241392100ece2153a0c1d23e3b01f |
| statistics/ |