Histone_ChIP-seq_ENCSR154HDX
Histone_ChIP-seq ENCSR154HDX [biosample_summary="Homo sapiens GM23338 originated from GM23248" and target="H3K79me2"]
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| Id: | Histone_ChIP-seq/ENCSR154HDX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR154HDX [biosamplesummary="Homo sapiens GM23338 originated from GM23248" and target="H3K79me2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN593YSD|/analyses/ENCAN593YSD/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF263XBT|/files/ENCFF263XBT/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 20968563 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K79me2-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF531WSU|/files/ENCFF531WSU/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 19646428 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K79me2-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF531WSU|/files/ENCFF531WSU/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF531WSU|/files/ENCFF531WSU/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 9.12. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR154HDX | float |
Histone_ChIP-seq_ENCSR154HDX |
Histone_ChIP-seq ENCSR154HDX [biosample_summary="Homo sapiens GM23338 originated from GM23248" and target="H3K79me2"]
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[1.4, 56.1] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF687IIW.bed.gz | 1.89 MB | bf73fcabea1335b3b5b460cc7ada20d7 |
| ENCFF687IIW.bed.gz.dvc | 101.0 B | 3192abde8bf6b9728a61354c747a943b |
| ENCFF687IIW.tabix.bed.gz | 860.96 KB | 4590f0a6ee3338922f6ece4c0b9a4015 |
| ENCFF687IIW.tabix.bed.gz.dvc | 106.0 B | db6e746c149ac25683be5927f18bdeb6 |
| ENCFF687IIW.tabix.bed.gz.tbi | 134.35 KB | 0250b801dc579c8c508a427705dcb22d |
| ENCFF687IIW.tabix.bed.gz.tbi.dvc | 110.0 B | 7879fc1239cfc17dd8d555543cffcfe2 |
| genomic_resource.yaml | 3.75 KB | dd0d7afba084d1f71e8bcf2926803878 |
| genomic_resource_original.yaml | 3.62 KB | b90f5a6d403a4498915f8ca65dab4759 |
| statistics/ |