Histone_ChIP-seq_ENCSR153SGD
Histone_ChIP-seq ENCSR153SGD [biosample_summary="Homo sapiens HUES48" and target="H3K4me3"]
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| Id: | Histone_ChIP-seq/ENCSR153SGD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR153SGD [biosamplesummary="Homo sapiens HUES48" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN820RTF|/analyses/ENCAN820RTF/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed alignments file {ENCFF270NKU|/files/ENCFF270NKU/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 18210503 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF270NKU|/files/ENCFF270NKU/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF270NKU|/files/ENCFF270NKU/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 8.60. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF443UEL|/files/ENCFF443UEL/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF443UEL|/files/ENCFF443UEL/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 9.47. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR153SGD | float |
Histone_ChIP-seq_ENCSR153SGD |
Histone_ChIP-seq ENCSR153SGD [biosample_summary="Homo sapiens HUES48" and target="H3K4me3"]
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[1.7, 81.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF530UOO.bed.gz | 1.18 MB | 99a0665b8cfc5200da21c894b6e66a8c |
| ENCFF530UOO.bed.gz.dvc | 101.0 B | efca5c79c34b698d73eb734edcbecdc5 |
| ENCFF530UOO.tabix.bed.gz | 504.49 KB | b72807d11b9823992b10074a7bc23477 |
| ENCFF530UOO.tabix.bed.gz.dvc | 106.0 B | 2b2746c51a5257c7088f31a5413aa95a |
| ENCFF530UOO.tabix.bed.gz.tbi | 223.8 KB | aeda9b12f6aee3f60e9a4935bd95a33c |
| ENCFF530UOO.tabix.bed.gz.tbi.dvc | 110.0 B | 874650a603443c87c22e9ce54485acd4 |
| genomic_resource.yaml | 4.46 KB | ec73b200347f507f2e90899bf766be85 |
| genomic_resource_original.yaml | 4.36 KB | c3191d7e2826367d7c47bd5bdcea66af |
| statistics/ |