Histone_ChIP-seq_ENCSR152QRE
Histone_ChIP-seq ENCSR152QRE [biosample_summary="Homo sapiens SK-N-MC" and target="H3K4me1"]
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| Id: | Histone_ChIP-seq/ENCSR152QRE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR152QRE [biosamplesummary="Homo sapiens SK-N-MC" and target="H3K4me1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN327QTY|/analyses/ENCAN327QTY/} has in progress subobject document {eb22d2f5-f697-4d59-b32c-7142c8606191|/documents/eb22d2f5-f697-4d59-b32c-7142c8606191/} audit_internal_action: Released analysis {ENCAN327QTY|/analyses/ENCAN327QTY/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: Processed alignments file {ENCFF493XFX|/files/ENCFF493XFX/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 36861664 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF493XFX|/files/ENCFF493XFX/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF493XFX|/files/ENCFF493XFX/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.77. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR152QRE | float |
Histone_ChIP-seq_ENCSR152QRE |
Histone_ChIP-seq ENCSR152QRE [biosample_summary="Homo sapiens SK-N-MC" and target="H3K4me1"]
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[1.53, 13.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF861QCD.bed.gz | 3.34 MB | 9587ac5caeccd77d25952cc039e1b71e |
| ENCFF861QCD.bed.gz.dvc | 101.0 B | 54bc0f1b237abe9478ec02133294b299 |
| ENCFF861QCD.tabix.bed.gz | 1.56 MB | 6e3d7b32ed2bf265ce3e6549e97b44e6 |
| ENCFF861QCD.tabix.bed.gz.dvc | 107.0 B | 960d8b7075d91a10f7871d12ab72195c |
| ENCFF861QCD.tabix.bed.gz.tbi | 393.2 KB | 1146b87efc8e820113773e9494135b06 |
| ENCFF861QCD.tabix.bed.gz.tbi.dvc | 110.0 B | 0ecf2cfebbfbbfb2ef2ff5a95843617e |
| genomic_resource.yaml | 3.41 KB | 544083f7c6c0a9357bc576d455987403 |
| genomic_resource_original.yaml | 3.3 KB | 0665e5338314fb693dcfc4a1027dd8c6 |
| statistics/ |