Histone_ChIP-seq_ENCSR152GST
Histone_ChIP-seq ENCSR152GST [biosample_summary="Homo sapiens foreskin melanocyte male newborn" and target="H3K9ac"]
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| Id: | Histone_ChIP-seq/ENCSR152GST |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR152GST [biosamplesummary="Homo sapiens foreskin melanocyte male newborn" and target="H3K9ac"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male newborn output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN953MIE|/analyses/ENCAN953MIE/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed redacted alignments file {ENCFF763XKK|/files/ENCFF763XKK/} processed by ChIP-seq ENCODE3 hg19 pipeline has 18742193 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF763XKK|/files/ENCFF763XKK/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF763XKK|/files/ENCFF763XKK/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 7.74. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR152GST | float |
Histone_ChIP-seq_ENCSR152GST |
Histone_ChIP-seq ENCSR152GST [biosample_summary="Homo sapiens foreskin melanocyte male newborn" and target="H3K9ac"]
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[1.9, 108] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF973JPP.bed.gz | 1.36 MB | 58a8a370ac87986b5a202c5dbd5a25ac |
| ENCFF973JPP.bed.gz.dvc | 101.0 B | b6e979e276dc234efc7b43ba2bfd52fd |
| ENCFF973JPP.tabix.bed.gz | 655.89 KB | c9eafed8ce8b200eb85fd1a11816493d |
| ENCFF973JPP.tabix.bed.gz.dvc | 106.0 B | 3d9ea8c89b7aebf2e5bebcccaa85ac88 |
| ENCFF973JPP.tabix.bed.gz.tbi | 215.2 KB | 73e99c48152f17da8c5167de398318ae |
| ENCFF973JPP.tabix.bed.gz.tbi.dvc | 110.0 B | 22c5f8b8d8f5a18013b251038356b91b |
| genomic_resource.yaml | 3.21 KB | 6d144e3c921cb1ac6d3b5f7453d1fa45 |
| genomic_resource_original.yaml | 3.08 KB | e831792061a6f5ce150efda0cab613f5 |
| statistics/ |