Resource
| Id | Histone_ChIP-seq/ENCSR150GWJ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR150GWJ [biosample_summary="Homo sapiens substantia nigra tissue female adult (75 years)" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (75 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN813IXB|/analyses/ENCAN813IXB/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF101FJW|/files/ENCFF101FJW/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 30959349 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR150GWJ | float |
Histone_ChIP-seq_ENCSR150GWJ |
Histone_ChIP-seq ENCSR150GWJ [biosample_summary="Homo sapiens substantia nigra tissue female adult (75 years)" and target="H3K4me1"]
|
 |
[1.7, 17.6] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 59337528 | 1.84% | 113296 |
| chr1 | 6231647 | 2.50% | 11341 |
| chr2 | 4730609 | 1.95% | 8980 |
| chr3 | 3733819 | 1.88% | 7424 |
| chr4 | 2300263 | 1.21% | 4739 |
| chr5 | 3258641 | 1.80% | 6343 |
| chr6 | 3314685 | 1.94% | 6568 |
| chr7 | 2724013 | 1.71% | 5531 |
| chr8 | 2266048 | 1.56% | 4523 |
| chr9 | 3009610 | 2.17% | 5612 |
| chr10 | 3503697 | 2.62% | 6313 |
| chr11 | 3835668 | 2.84% | 6997 |
| chr12 | 2487426 | 1.87% | 4887 |
| chr13 | 1374972 | 1.20% | 2788 |
| chr14 | 2158493 | 2.02% | 4089 |
| chr15 | 2204708 | 2.16% | 4199 |
| chr16 | 2029442 | 2.25% | 3875 |
| chr17 | 3080391 | 3.70% | 5515 |
| chr18 | 1275030 | 1.59% | 2538 |
| chr19 | 1716456 | 2.93% | 3204 |
| chr20 | 1725963 | 2.68% | 3123 |
| chr21 | 580994 | 1.24% | 1191 |
| chr22 | 1395299 | 2.75% | 2485 |
| chrX | 399654 | 0.26% | 1031 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 113296 | 165 | 9612 | 523.74 | 408 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF966OFJ.bed.gz | 2.26 MB | 4dda855dafb8cad0ece4fa853e13decf |
| ENCFF966OFJ.tabix.bed.gz | 1.1 MB | 0d61e6af1f194762c0d6a8e476393416 |
| ENCFF966OFJ.tabix.bed.gz.tbi | 303.3 KB | f69687ee09f708c2372514fe8ddaea30 |
| genomic_resource.yaml | 2.02 KB | b0aea00dbadb48d60ac805fd0651bcc7 |
| statistics/ |