Histone_ChIP-seq_ENCSR150GLE
Histone_ChIP-seq ENCSR150GLE [biosample_summary="Homo sapiens esophagus tissue male adult (34 years)" and target="H3K9me3"]
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| Id: | Histone_ChIP-seq/ENCSR150GLE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR150GLE [biosamplesummary="Homo sapiens esophagus tissue male adult (34 years)" and target="H3K9me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (34 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN850BOT|/analyses/ENCAN850BOT/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed unfiltered alignments file {ENCFF715RSO|/files/ENCFF715RSO/} processed by ChIP-seq ENCODE3 hg19 pipeline has 32026620 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF462ZPE|/files/ENCFF462ZPE/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF462ZPE|/files/ENCFF462ZPE/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 8.44. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR150GLE | float |
Histone_ChIP-seq_ENCSR150GLE |
Histone_ChIP-seq ENCSR150GLE [biosample_summary="Homo sapiens esophagus tissue male adult (34 years)" and target="H3K9me3"]
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[1.47, 40.1] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF235VTD.bed.gz | 1.24 MB | 6d0a8f22299c8cf517c141dd3e319756 |
| ENCFF235VTD.bed.gz.dvc | 101.0 B | 92e34c4786294cc3b58ab8abd0c294ce |
| ENCFF235VTD.tabix.bed.gz | 644.41 KB | 6018554210584f5fa882186680a57bc4 |
| ENCFF235VTD.tabix.bed.gz.dvc | 106.0 B | 20af03084c109b5cd002a1287fd810d1 |
| ENCFF235VTD.tabix.bed.gz.tbi | 330.72 KB | 1012c1feba6c32e67fe8f9e2d02fb56e |
| ENCFF235VTD.tabix.bed.gz.tbi.dvc | 110.0 B | 04a1beeb66a135953c99d67fbaf2751c |
| genomic_resource.yaml | 3.23 KB | aff3c29e98bbf1d8651043c149ed0aea |
| genomic_resource_original.yaml | 3.09 KB | 29bdb26e03363d7dde2923e4ce2d76ef |
| statistics/ |