Histone_ChIP-seq_ENCSR148FWR
Histone_ChIP-seq ENCSR148FWR [biosample_summary="Homo sapiens gastrocnemius medialis tissue male adult (37 years)" and target="H3K4me1"]
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| Id: | Histone_ChIP-seq/ENCSR148FWR |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR148FWR [biosamplesummary="Homo sapiens gastrocnemius medialis tissue male adult (37 years)" and target="H3K4me1"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (37 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN720JLA|/analyses/ENCAN720JLA/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN720JLA|/analyses/ENCAN720JLA/} has in progress subobject document {bc4f4da6-41a8-4013-afc4-6b7228706234|/documents/bc4f4da6-41a8-4013-afc4-6b7228706234/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF573HBD|/files/ENCFF573HBD/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF573HBD|/files/ENCFF573HBD/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.49. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR148FWR | float |
Histone_ChIP-seq_ENCSR148FWR |
Histone_ChIP-seq ENCSR148FWR [biosample_summary="Homo sapiens gastrocnemius medialis tissue male adult (37 years)" and target="H3K4me1"]
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[1.68, 14.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF851MDY.bed.gz | 2.7 MB | 9697a9b5a232221aeb83e1676e9c703a |
| ENCFF851MDY.bed.gz.dvc | 101.0 B | 26d14854edf0291a6fbe3723e8b4575d |
| ENCFF851MDY.tabix.bed.gz | 1.27 MB | 45a7bd71d6c44d06e0e47d5050fc0e2b |
| ENCFF851MDY.tabix.bed.gz.dvc | 107.0 B | f7110ba32c320e00470ec75494bbefdc |
| ENCFF851MDY.tabix.bed.gz.tbi | 287.09 KB | 59ef04e9a2b276b806deb7e510c7867c |
| ENCFF851MDY.tabix.bed.gz.tbi.dvc | 110.0 B | 6892cc7991ae0da2de8542a224174de9 |
| genomic_resource.yaml | 3.01 KB | 0778e6ad0be9dc915e864f25cf1e6eab |
| genomic_resource_original.yaml | 2.86 KB | 2feffee351e212fcc3ddb055b182d837 |
| statistics/ |