| Id: | Histone_ChIP-seq/ENCSR146JLC |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR146JLC [biosamplesummary="Homo sapiens subcutaneous abdominal adipose tissue tissue nuclear fraction female adult (59 years)" and target="H3K9ac"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (59 years) nuclear fraction output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN538ZHP|/analyses/ENCAN538ZHP/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF779CCW|/files/ENCFF779CCW/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF779CCW|/files/ENCFF779CCW/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 8.96. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR146JLC | float |
Histone_ChIP-seq_ENCSR146JLC |
Histone_ChIP-seq ENCSR146JLC [biosample_summary="Homo sapiens subcutaneous abdominal adipose tissue tissue nuclear fraction female adult (59 years)" and target="H3K9ac"]
|
 |
[1.33, 50.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF534GXH.bed.gz | 1011.68 KB | b62eaf543d23c189e59163152e6bbb77 |
| ENCFF534GXH.bed.gz.dvc | 101.0 B | 900096135ea4da8dd115bcda30190ad3 |
| ENCFF534GXH.tabix.bed.gz | 486.86 KB | 3af821d564cd458b866a464028cd5e90 |
| ENCFF534GXH.tabix.bed.gz.dvc | 106.0 B | 0e2a825c49c24ea0e1f2c0335c7cf91a |
| ENCFF534GXH.tabix.bed.gz.tbi | 186.59 KB | 392e04a0f12c039577f234a082529861 |
| ENCFF534GXH.tabix.bed.gz.tbi.dvc | 110.0 B | e7a9515a1cf74c0d62bc4d8efd1e596f |
| genomic_resource.yaml | 2.94 KB | 4d44cda7ae892423f0b53130d7f6e99c |
| genomic_resource_original.yaml | 2.76 KB | 6880d6dc4ec34fd338001549f8c0588c |
| statistics/ |