Resource
| Id | Histone_ChIP-seq/ENCSR146JLC |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR146JLC [biosample_summary="Homo sapiens subcutaneous abdominal adipose tissue tissue nuclear fraction female adult (59 years)" and target="H3K9ac"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (59 years) nuclear fraction output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN538ZHP|/analyses/ENCAN538ZHP/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF779CCW|/files/ENCFF779CCW/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF779CCW|/files/ENCFF779CCW/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 8.96. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR146JLC | float |
Histone_ChIP-seq_ENCSR146JLC |
Histone_ChIP-seq ENCSR146JLC [biosample_summary="Homo sapiens subcutaneous abdominal adipose tissue tissue nuclear fraction female adult (59 years)" and target="H3K9ac"]
|
 |
[1.33, 50.6] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 37996454 | 1.18% | 47837 |
| chr1 | 3917558 | 1.57% | 4905 |
| chr2 | 2539341 | 1.05% | 3216 |
| chr3 | 2276014 | 1.15% | 2731 |
| chr4 | 1262257 | 0.66% | 1527 |
| chr5 | 1782784 | 0.98% | 2120 |
| chr6 | 1980828 | 1.16% | 2426 |
| chr7 | 1718375 | 1.08% | 2220 |
| chr8 | 1305858 | 0.90% | 1665 |
| chr9 | 1720353 | 1.24% | 2222 |
| chr10 | 1698287 | 1.27% | 2181 |
| chr11 | 2305547 | 1.71% | 2804 |
| chr12 | 2062174 | 1.55% | 2508 |
| chr13 | 707207 | 0.62% | 887 |
| chr14 | 1249132 | 1.17% | 1598 |
| chr15 | 1236619 | 1.21% | 1634 |
| chr16 | 1563005 | 1.73% | 2089 |
| chr17 | 2469759 | 2.97% | 3175 |
| chr18 | 540670 | 0.67% | 723 |
| chr19 | 2361942 | 4.03% | 2946 |
| chr20 | 1119826 | 1.74% | 1412 |
| chr21 | 405825 | 0.87% | 533 |
| chr22 | 1026583 | 2.02% | 1328 |
| chrM | 6103 | 36.83% | 8 |
| chrX | 740407 | 0.47% | 979 |
| 3342 contigs with no values (186287931 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 47837 | 180 | 8908 | 794.29 | 590 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF534GXH.bed.gz | 1011.68 KB | b62eaf543d23c189e59163152e6bbb77 |
| ENCFF534GXH.tabix.bed.gz | 486.86 KB | 3af821d564cd458b866a464028cd5e90 |
| ENCFF534GXH.tabix.bed.gz.tbi | 186.59 KB | 392e04a0f12c039577f234a082529861 |
| genomic_resource.yaml | 2.94 KB | 4d44cda7ae892423f0b53130d7f6e99c |
| statistics/ |