Histone_ChIP-seq_ENCSR146JFX
Histone_ChIP-seq ENCSR146JFX [biosample_summary="Homo sapiens skeletal muscle tissue tissue" and target="H3K4me1"]
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| Id: | Histone_ChIP-seq/ENCSR146JFX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR146JFX [biosamplesummary="Homo sapiens skeletal muscle tissue tissue" and target="H3K4me1"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN768LPH|/analyses/ENCAN768LPH/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF614KUA|/files/ENCFF614KUA/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 15964936 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF614KUA|/files/ENCFF614KUA/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF614KUA|/files/ENCFF614KUA/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 5.63. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR146JFX | float |
Histone_ChIP-seq_ENCSR146JFX |
Histone_ChIP-seq ENCSR146JFX [biosample_summary="Homo sapiens skeletal muscle tissue tissue" and target="H3K4me1"]
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[1.98, 26.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF291HWC.bed.gz | 2.35 MB | 323e50b95120c27a9f03133f5ba56838 |
| ENCFF291HWC.bed.gz.dvc | 101.0 B | 6cb2a7ffaa383453f62e44ca24016885 |
| ENCFF291HWC.tabix.bed.gz | 1.15 MB | 74a0b1fd549e8b57418d051d88a15f87 |
| ENCFF291HWC.tabix.bed.gz.dvc | 107.0 B | 70978614839175c420fea06e7f861948 |
| ENCFF291HWC.tabix.bed.gz.tbi | 300.41 KB | 8cc8f3de4bef194930a453e08af9f44e |
| ENCFF291HWC.tabix.bed.gz.tbi.dvc | 110.0 B | 204bd45a1d07f60390cd3c19fb97cc07 |
| genomic_resource.yaml | 3.27 KB | 395e25821e63af976a5a029a9d5d30f3 |
| genomic_resource_original.yaml | 3.14 KB | f1bce7240d5a02a5b7187650b48e23d9 |
| statistics/ |