Resource
| Id | Histone_ChIP-seq/ENCSR146DAL |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR146DAL [biosample_summary="Homo sapiens mucosa of rectum tissue female adult (61 years)" and target="H3K4me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (61 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN435GXT|/analyses/ENCAN435GXT/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed redacted alignments file {ENCFF561GIK|/files/ENCFF561GIK/} processed by ChIP-seq ENCODE3 hg19 pipeline has 19049527 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR146DAL | float |
Histone_ChIP-seq_ENCSR146DAL |
Histone_ChIP-seq ENCSR146DAL [biosample_summary="Homo sapiens mucosa of rectum tissue female adult (61 years)" and target="H3K4me3"]
|
 |
[1.56, 78.9] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 40925850 | 1.27% | 39155 |
| chr1 | 4160492 | 1.67% | 3931 |
| chr2 | 2820329 | 1.16% | 2718 |
| chr3 | 2294524 | 1.16% | 2132 |
| chr4 | 1708927 | 0.90% | 1607 |
| chr5 | 1898536 | 1.05% | 1731 |
| chr6 | 2383467 | 1.40% | 2167 |
| chr7 | 2023243 | 1.27% | 1948 |
| chr8 | 1485173 | 1.02% | 1426 |
| chr9 | 1695910 | 1.23% | 1635 |
| chr10 | 1717588 | 1.28% | 1659 |
| chr11 | 2282492 | 1.69% | 2135 |
| chr12 | 2128711 | 1.60% | 2000 |
| chr13 | 851728 | 0.74% | 828 |
| chr14 | 1375287 | 1.28% | 1277 |
| chr15 | 1346930 | 1.32% | 1321 |
| chr16 | 1616047 | 1.79% | 1600 |
| chr17 | 2437441 | 2.93% | 2315 |
| chr18 | 686977 | 0.85% | 695 |
| chr19 | 2557776 | 4.36% | 2571 |
| chr20 | 1037959 | 1.61% | 1008 |
| chr21 | 445384 | 0.95% | 487 |
| chr22 | 908319 | 1.79% | 913 |
| chrX | 1061915 | 0.68% | 1050 |
| chrY | 695 | <0.01% | 1 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 39155 | 160 | 10919 | 1045.23 | 701 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF067PQK.bed.gz | 976.41 KB | 5975cfb1cb5a2f0fcd561fb30a330aa3 |
| ENCFF067PQK.tabix.bed.gz | 431.5 KB | dde79d3830d836f7d861ee78b6dd164b |
| ENCFF067PQK.tabix.bed.gz.tbi | 187.31 KB | 44746b789fc19f28e4edcae915794668 |
| genomic_resource.yaml | 2.01 KB | a0d2851f1e37275ee2fa48e514118dbd |
| statistics/ |