Histone_ChIP-seq_ENCSR143XNJ
Histone_ChIP-seq ENCSR143XNJ [biosample_summary="Homo sapiens esophagus squamous epithelium tissue male adult (37 years)" and target="H3K27ac"]
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| Id: | Histone_ChIP-seq/ENCSR143XNJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR143XNJ [biosamplesummary="Homo sapiens esophagus squamous epithelium tissue male adult (37 years)" and target="H3K27ac"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (37 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN175JLX|/analyses/ENCAN175JLX/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN175JLX|/analyses/ENCAN175JLX/} has in progress subobject document {9471c651-34c3-47ed-9c6a-5850a1d11e59|/documents/9471c651-34c3-47ed-9c6a-5850a1d11e59/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF700AIF|/files/ENCFF700AIF/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR143XNJ | float |
Histone_ChIP-seq_ENCSR143XNJ |
Histone_ChIP-seq ENCSR143XNJ [biosample_summary="Homo sapiens esophagus squamous epithelium tissue male adult (37 years)" and target="H3K27ac"]
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[1.66, 74] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF847EPP.bed.gz | 2.29 MB | 417296ce2e1b251591318e3c500f331c |
| ENCFF847EPP.bed.gz.dvc | 101.0 B | f40d04e61090cc9bb504489a4c1c82a9 |
| ENCFF847EPP.tabix.bed.gz | 1.01 MB | 91c54d978eda49c1c90b6fd191438166 |
| ENCFF847EPP.tabix.bed.gz.dvc | 107.0 B | f26fbbe98a5587b23045b619dc941ba4 |
| ENCFF847EPP.tabix.bed.gz.tbi | 278.31 KB | d54b2fb8b0600939c138da3e187e18d5 |
| ENCFF847EPP.tabix.bed.gz.tbi.dvc | 110.0 B | 3270a7e89e23c4ded722641eb41deae6 |
| genomic_resource.yaml | 2.42 KB | 329802af62a700f3b742b603f81a55c3 |
| genomic_resource_original.yaml | 2.26 KB | ff5cf97bf72567c3ae2426c943925705 |
| statistics/ |