Histone_ChIP-seq_ENCSR143RMH
Histone_ChIP-seq ENCSR143RMH [biosample_summary="Homo sapiens smooth muscle cell originated from H9" and target="H3K27me3"]
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| Id: | Histone_ChIP-seq/ENCSR143RMH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR143RMH [biosamplesummary="Homo sapiens smooth muscle cell originated from H9" and target="H3K27me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: female embryo (5 days) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN177FCB|/analyses/ENCAN177FCB/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN177FCB|/analyses/ENCAN177FCB/} has in progress subobject document {0752a293-f964-495b-8021-587be3b1620b|/documents/0752a293-f964-495b-8021-587be3b1620b/} audit_warning: Processed alignments file {ENCFF418YDM|/files/ENCFF418YDM/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 38773345 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF198YOB|/files/ENCFF198YOB/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF198YOB|/files/ENCFF198YOB/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.23. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR143RMH | float |
Histone_ChIP-seq_ENCSR143RMH |
Histone_ChIP-seq ENCSR143RMH [biosample_summary="Homo sapiens smooth muscle cell originated from H9" and target="H3K27me3"]
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[1.61, 14.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF817CHW.bed.gz | 1.14 MB | c6f3d360dac1fea0b8000155fd786a00 |
| ENCFF817CHW.bed.gz.dvc | 101.0 B | a36e316036b22443c214a8b8db51dbb4 |
| ENCFF817CHW.tabix.bed.gz | 580.93 KB | 82e7bd9dc35e5f1608bb65d57a7e88c4 |
| ENCFF817CHW.tabix.bed.gz.dvc | 106.0 B | 9794f04c3da9f0a7ef91cd6442ad63f2 |
| ENCFF817CHW.tabix.bed.gz.tbi | 170.17 KB | ce01719cf8d25f1c4d151f8370a96e7e |
| ENCFF817CHW.tabix.bed.gz.tbi.dvc | 110.0 B | 020ffe2a9f58f27b51756ca81c0cf1f2 |
| genomic_resource.yaml | 3.48 KB | a805a571bfab2082e533d946690c078a |
| genomic_resource_original.yaml | 3.34 KB | b8e96ed0be1685b08db251bdf5c86e68 |
| statistics/ |