Resource
| Id | Histone_ChIP-seq/ENCSR142BBV |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR142BBV [biosample_summary="Homo sapiens colonic mucosa tissue female adult (73 years)" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (73 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN044JEK|/analyses/ENCAN044JEK/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF948RWW|/files/ENCFF948RWW/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline has 12817556 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR142BBV | float |
Histone_ChIP-seq_ENCSR142BBV |
Histone_ChIP-seq ENCSR142BBV [biosample_summary="Homo sapiens colonic mucosa tissue female adult (73 years)" and target="H3K36me3"]
|
 |
[2.02, 20.7] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 50829627 | 1.58% | 114711 |
| chr1 | 4952972 | 1.99% | 11376 |
| chr2 | 3148790 | 1.30% | 8020 |
| chr3 | 2650520 | 1.34% | 6406 |
| chr4 | 1552916 | 0.82% | 3918 |
| chr5 | 1987536 | 1.09% | 4917 |
| chr6 | 1895315 | 1.11% | 4611 |
| chr7 | 2297253 | 1.44% | 5292 |
| chr8 | 1473532 | 1.02% | 3644 |
| chr9 | 2412694 | 1.74% | 5336 |
| chr10 | 2037112 | 1.52% | 5065 |
| chr11 | 2841444 | 2.10% | 6025 |
| chr12 | 2784669 | 2.09% | 6047 |
| chr13 | 704776 | 0.62% | 1973 |
| chr14 | 1687784 | 1.58% | 3940 |
| chr15 | 1754216 | 1.72% | 4310 |
| chr16 | 2997274 | 3.32% | 6065 |
| chr17 | 3630566 | 4.36% | 7507 |
| chr18 | 613304 | 0.76% | 1648 |
| chr19 | 4441094 | 7.58% | 8012 |
| chr20 | 1745251 | 2.71% | 3795 |
| chr21 | 703426 | 1.51% | 1578 |
| chr22 | 1906622 | 3.75% | 3616 |
| chrX | 610561 | 0.39% | 1610 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 114711 | 145 | 7500 | 443.11 | 334 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF893YTR.bed.gz | 2.01 MB | e16b389bc0854f37bbca772508e04714 |
| ENCFF893YTR.tabix.bed.gz | 1.04 MB | 64dece0f1dedeffd529741e44dd649e7 |
| ENCFF893YTR.tabix.bed.gz.tbi | 194.66 KB | 98bb91b80cafe2dc4fffd581aa1d884e |
| genomic_resource.yaml | 2.02 KB | 1f7629569df8182aae4dae511a137f4c |
| statistics/ |