Resource

Id Histone_ChIP-seq/ENCSR139TLAcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR139TLA [biosample_summary="Homo sapiens ovary tissue female adult (30 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR139TLA
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000992/
  • biosample_summary: Homo sapiens ovary tissue female adult (30 years)
  • date_created: 2015-10-01T07:16:07.771099+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR139TLA
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (30 years)
  • status: released
  • submitter_comment: Several of the old analyses and files on this dataset have been revoked due to processing with a contaminated control. The new analyses and files submitted in Feb 2023 are the corrected version.
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR139TLA float

Histone_ChIP-seq_ENCSR139TLA
Histone_ChIP-seq ENCSR139TLA [biosample_summary="Homo sapiens ovary tissue female adult (30 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR139TLA [1.81, 72.6]
n
37,487,309
mean
25.5
sd
14.1

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 374873091.17% 27785
chr1 3621278 1.45% 2647
chr2 2665951 1.10% 1948
chr3 2227576 1.12% 1640
chr4 1651928 0.87% 1226
chr5 1776115 0.98% 1273
chr6 2238496 1.31% 1660
chr7 1819550 1.14% 1383
chr8 1467533 1.01% 1127
chr9 1540506 1.11% 1169
chr10 1682694 1.26% 1287
chr11 1972062 1.46% 1427
chr12 1983181 1.49% 1430
chr13 788776 0.69% 609
chr14 1231898 1.15% 911
chr15 1225976 1.20% 885
chr16 1365907 1.51% 1007
chr17 1985546 2.38% 1461
chr18 718785 0.89% 549
chr19 2226309 3.80% 1713
chr20 899825 1.40% 667
chr21 355324 0.76% 277
chr22 807273 1.59% 576
chrX 1234820 0.79% 913
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 27785 190 14085 1349.19 1095
global segment-length histogram

Files

Filename Size md5
ENCFF112KXI.bed.gz 753.15 KB 823c85d779c4ae7626d78ad0efe2e271
ENCFF112KXI.tabix.bed.gz 322.81 KB 66ac6af7e95fe4e33e1850870c18e359
ENCFF112KXI.tabix.bed.gz.tbi 172.12 KB a94c986dfa810141ad2258f22ac78375
genomic_resource.yaml 1.69 KB 0c2088c51804c6159cb997bd6bc4657f
statistics/