Resource
| Id | Histone_ChIP-seq/ENCSR134HVI |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR134HVI [biosample_summary="Homo sapiens mammary epithelial cell female adult (18 years)" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (18 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN968MAT|/analyses/ENCAN968MAT/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF914ACQ|/files/ENCFF914ACQ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 16690417 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR134HVI | float |
Histone_ChIP-seq_ENCSR134HVI |
Histone_ChIP-seq ENCSR134HVI [biosample_summary="Homo sapiens mammary epithelial cell female adult (18 years)" and target="H3K27me3"]
|
 |
[1.72, 45] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 45117095 | 1.40% | 46983 |
| chr1 | 3725687 | 1.50% | 4025 |
| chr1_KI270712v1_random | 4031 | 2.29% | 4 |
| chr1_KI270713v1_random | 3203 | 7.86% | 4 |
| chr1_KI270714v1_random | 955 | 2.29% | 2 |
| chr2 | 3355371 | 1.39% | 3585 |
| chr3 | 2014200 | 1.02% | 2281 |
| chr4 | 1968850 | 1.04% | 1900 |
| chr5 | 2070507 | 1.14% | 2164 |
| chr6 | 1766129 | 1.03% | 2032 |
| chr7 | 2346903 | 1.47% | 2366 |
| chr8 | 1620940 | 1.12% | 1741 |
| chr9 | 2435020 | 1.76% | 2415 |
| chr9_KI270719v1_random | 498 | 0.28% | 1 |
| chr10 | 2366663 | 1.77% | 2503 |
| chr11 | 2863405 | 2.12% | 2909 |
| chr12 | 1582288 | 1.19% | 1713 |
| chr13 | 870678 | 0.76% | 884 |
| chr14 | 1400091 | 1.31% | 1379 |
| chr14_GL000225v1_random | 1434 | 0.68% | 2 |
| chr14_KI270722v1_random | 749 | 0.39% | 1 |
| chr15 | 1377037 | 1.35% | 1545 |
| chr16 | 1926639 | 2.13% | 1794 |
| chr17 | 2965417 | 3.56% | 2947 |
| chr17_GL000205v2_random | 5246 | 2.83% | 5 |
| chr18 | 698316 | 0.87% | 841 |
| chr19 | 1819675 | 3.10% | 1793 |
| chr20 | 2164367 | 3.36% | 2102 |
| chr21 | 866994 | 1.86% | 801 |
| chr22 | 1532649 | 3.02% | 1529 |
| chr22_KI270733v1_random | 10326 | 5.74% | 6 |
| chr22_KI270735v1_random | 1031 | 2.41% | 1 |
| chrUn_GL000219v1 | 3009 | 1.68% | 3 |
| chrUn_KI270438v1 | 573 | 0.51% | 1 |
| chrUn_KI270442v1 | 3775 | 0.96% | 5 |
| chrX | 1343855 | 0.86% | 1698 |
| chrY | 584 | <0.01% | 1 |
| 3330 contigs with no values (127144574 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 46983 | 320 | 18580 | 960.29 | 707 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF317YOG.bed.gz | 998.43 KB | aa98ff73f451b1e0f1a890dbf1f5d292 |
| ENCFF317YOG.tabix.bed.gz | 481.92 KB | 9bebbcfe2c24c8543f6acfc8c0371c90 |
| ENCFF317YOG.tabix.bed.gz.tbi | 171.73 KB | a8ebfa74fa3c9ca79be2df9c3604b313 |
| genomic_resource.yaml | 2.02 KB | 69b7b492df2b6e30bad500683fa71932 |
| statistics/ |