Resource

Id Histone_ChIP-seq/ENCSR131MFEcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR131MFE [biosample_summary="Homo sapiens with Cognitive impairment; dorsolateral prefrontal cortex tissue female adult (86 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR131MFE
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0009834/
  • biosample_summary: Homo sapiens with Cognitive impairment; dorsolateral prefrontal cortex tissue female adult (86 years)
  • date_created: 2021-01-28T04:10:50.804030+00:00
  • date_released: 2021-05-06
  • doi: 10.17989/ENCSR131MFE
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (86 years) with Cognitive impairment
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR131MFE float

Histone_ChIP-seq_ENCSR131MFE
Histone_ChIP-seq ENCSR131MFE [biosample_summary="Homo sapiens with Cognitive impairment; dorsolateral prefrontal cortex tissue female adult (86 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR131MFE [1.71, 49.6]
n
51,747,686
mean
19
sd
10.7

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 517476861.61% 33996
chr1 5015601 2.01% 3254
chr2 3686418 1.52% 2427
chr3 3119885 1.57% 1978
chr4 2233945 1.17% 1419
chr5 2637148 1.45% 1699
chr6 3060141 1.79% 2006
chr7 2518764 1.58% 1735
chr8 2065390 1.42% 1354
chr9 2147865 1.55% 1463
chr10 2290524 1.71% 1535
chr11 2747415 2.03% 1772
chr12 2692076 2.02% 1723
chr13 1255009 1.10% 858
chr14 1683405 1.57% 1057
chr15 1603650 1.57% 1062
chr16 1915333 2.12% 1289
chr17 2747747 3.30% 1780
chr18 1040413 1.29% 702
chr19 2934444 5.01% 1952
chr20 1292392 2.01% 857
chr21 520203 1.11% 372
chr22 1079300 2.12% 729
chrX 1460618 0.94% 973
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 33996 210 35791 1522.17 1109
global segment-length histogram

Files

Filename Size md5
ENCFF629UTT.bed.gz 842.21 KB 146aa95ac9be517385b0cac1baaafdb7
ENCFF629UTT.tabix.bed.gz 381.21 KB 2155d5d256d5d1f5f733dcd768047422
ENCFF629UTT.tabix.bed.gz.tbi 195.71 KB 5dc60a3d49795551cd656952667e9b8a
genomic_resource.yaml 1.7 KB b6b355dda67a4dee5782e643c682bbdb
statistics/