Resource
| Id | Histone_ChIP-seq/ENCSR131EED |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR131EED [biosample_summary="Homo sapiens placenta tissue female embryo (113 days)" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: female embryo (113 days) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN993EPX|/analyses/ENCAN993EPX/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN993EPX|/analyses/ENCAN993EPX/} has in progress subobject document {6aaa132f-692e-4675-8890-aefb6f695bd2|/documents/6aaa132f-692e-4675-8890-aefb6f695bd2/} audit_not_compliant: Processed alignments file {ENCFF424RUK|/files/ENCFF424RUK/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 21532813 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR131EED | float |
Histone_ChIP-seq_ENCSR131EED |
Histone_ChIP-seq ENCSR131EED [biosample_summary="Homo sapiens placenta tissue female embryo (113 days)" and target="H3K36me3"]
|
 |
[1.89, 19.5] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 94496149 | 2.94% | 147879 |
| chr1 | 9424595 | 3.79% | 14390 |
| chr2 | 6924385 | 2.86% | 11770 |
| chr3 | 5593593 | 2.82% | 9259 |
| chr4 | 3438755 | 1.81% | 5925 |
| chr5 | 4847636 | 2.67% | 7890 |
| chr6 | 3984559 | 2.33% | 6665 |
| chr7 | 4352226 | 2.73% | 7000 |
| chr8 | 3072386 | 2.12% | 5350 |
| chr9 | 4285817 | 3.10% | 6500 |
| chr10 | 4135375 | 3.09% | 6760 |
| chr11 | 5107107 | 3.78% | 7447 |
| chr12 | 5112689 | 3.84% | 7619 |
| chr13 | 1731037 | 1.51% | 3130 |
| chr14 | 3407708 | 3.18% | 5501 |
| chr15 | 3450416 | 3.38% | 5622 |
| chr16 | 4580831 | 5.07% | 6474 |
| chr17 | 5911911 | 7.10% | 8353 |
| chr18 | 1395472 | 1.74% | 2457 |
| chr19 | 5526559 | 9.43% | 7610 |
| chr20 | 3081972 | 4.78% | 4442 |
| chr21 | 1157214 | 2.48% | 1758 |
| chr22 | 2724378 | 5.36% | 3601 |
| chrX | 1249528 | 0.80% | 2356 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 147879 | 155 | 24071 | 639.01 | 421 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF098OVM.bed.gz | 2.65 MB | 317ea0ad0f2417c12b35bd899ba836ed |
| ENCFF098OVM.tabix.bed.gz | 1.35 MB | a356d1ae1287bd1766ba446a79d0a5c4 |
| ENCFF098OVM.tabix.bed.gz.tbi | 171.17 KB | 4a4edd601b0c052f1d5553e8b4d47a3a |
| genomic_resource.yaml | 2.21 KB | 52c243e35e01a7f22805a997ff43c8ad |
| statistics/ |