Histone_ChIP-seq_ENCSR130XNJ
Histone_ChIP-seq ENCSR130XNJ [biosample_summary="Homo sapiens heart left ventricle tissue male adult (61 years)" and target="H3K4me1"]
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| Id: | Histone_ChIP-seq/ENCSR130XNJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR130XNJ [biosamplesummary="Homo sapiens heart left ventricle tissue male adult (61 years)" and target="H3K4me1"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (61 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN347UJB|/analyses/ENCAN347UJB/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF532RKH|/files/ENCFF532RKH/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF532RKH|/files/ENCFF532RKH/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.68. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR130XNJ | float |
Histone_ChIP-seq_ENCSR130XNJ |
Histone_ChIP-seq ENCSR130XNJ [biosample_summary="Homo sapiens heart left ventricle tissue male adult (61 years)" and target="H3K4me1"]
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[1.65, 9.06] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF213YBO.bed.gz | 1.57 MB | 087840b2921fb5b7975ac75dae15a385 |
| ENCFF213YBO.bed.gz.dvc | 101.0 B | ee6dcd4b25fd3df68e5b394ea359735d |
| ENCFF213YBO.tabix.bed.gz | 801.97 KB | ac3bcd627e9dde879011ef121b144908 |
| ENCFF213YBO.tabix.bed.gz.dvc | 106.0 B | 359b5b1d2041220bfc5686b488a8f8c7 |
| ENCFF213YBO.tabix.bed.gz.tbi | 246.63 KB | 3046e45936fdcc113dabadd1e3b78868 |
| ENCFF213YBO.tabix.bed.gz.tbi.dvc | 110.0 B | ec124196afd6fa6524887669dba38853 |
| genomic_resource.yaml | 2.79 KB | 6ff52eb9464db53dd318c9e86ca7dd8b |
| genomic_resource_original.yaml | 2.65 KB | 18fb9c7f7465d45134302db40e610596 |
| statistics/ |