Resource
| Id | Histone_ChIP-seq/ENCSR130XNJ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR130XNJ [biosample_summary="Homo sapiens heart left ventricle tissue male adult (61 years)" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (61 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN347UJB|/analyses/ENCAN347UJB/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF532RKH|/files/ENCFF532RKH/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF532RKH|/files/ENCFF532RKH/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.68. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR130XNJ | float |
Histone_ChIP-seq_ENCSR130XNJ |
Histone_ChIP-seq ENCSR130XNJ [biosample_summary="Homo sapiens heart left ventricle tissue male adult (61 years)" and target="H3K4me1"]
|
 |
[1.65, 9.06] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 53741967 | 1.67% | 77853 |
| chr1 | 5585324 | 2.24% | 7918 |
| chr2 | 4253046 | 1.76% | 6199 |
| chr3 | 3817210 | 1.93% | 5652 |
| chr4 | 1810197 | 0.95% | 2932 |
| chr5 | 2753518 | 1.52% | 4159 |
| chr6 | 2740972 | 1.60% | 4349 |
| chr7 | 2303732 | 1.45% | 3602 |
| chr8 | 2120268 | 1.46% | 3220 |
| chr9 | 2508335 | 1.81% | 3409 |
| chr10 | 3054945 | 2.28% | 4276 |
| chr11 | 3031340 | 2.24% | 4269 |
| chr12 | 2759042 | 2.07% | 3918 |
| chr13 | 1272564 | 1.11% | 1966 |
| chr14 | 1841442 | 1.72% | 2597 |
| chr15 | 1993198 | 1.95% | 2896 |
| chr16 | 1906114 | 2.11% | 2729 |
| chr17 | 3077412 | 3.70% | 4080 |
| chr18 | 949242 | 1.18% | 1483 |
| chr19 | 2088654 | 3.56% | 2774 |
| chr20 | 1603988 | 2.49% | 2248 |
| chr21 | 512879 | 1.10% | 785 |
| chr22 | 1572974 | 3.10% | 2036 |
| chrX | 183880 | 0.12% | 352 |
| chrY | 1691 | <0.01% | 4 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 77853 | 215 | 15207 | 690.3 | 540 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF213YBO.bed.gz | 1.57 MB | 087840b2921fb5b7975ac75dae15a385 |
| ENCFF213YBO.tabix.bed.gz | 801.97 KB | ac3bcd627e9dde879011ef121b144908 |
| ENCFF213YBO.tabix.bed.gz.tbi | 246.63 KB | 3046e45936fdcc113dabadd1e3b78868 |
| genomic_resource.yaml | 2.79 KB | 6ff52eb9464db53dd318c9e86ca7dd8b |
| statistics/ |