Resource

Id Histone_ChIP-seq/ENCSR130PLZcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR130PLZ [biosample_summary="Homo sapiens neurosphere female embryo (17 weeks) originated from ganglionic eminence" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR130PLZ
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000427/
  • biosample_summary: Homo sapiens neurosphere female embryo (17 weeks) originated from ganglionic eminence
  • date_created: 2015-09-15T20:27:18.339572+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR130PLZ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (17 weeks)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR130PLZ float

Histone_ChIP-seq_ENCSR130PLZ
Histone_ChIP-seq ENCSR130PLZ [biosample_summary="Homo sapiens neurosphere female embryo (17 weeks) originated from ganglionic eminence" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR130PLZ [2.01, 118]
n
51,992,646
mean
49
sd
28.6

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 519926461.62% 33569
chr1 5029480 2.02% 3231
chr2 3652835 1.51% 2376
chr3 3025139 1.53% 1913
chr4 2193617 1.15% 1399
chr5 2590376 1.43% 1672
chr6 2999824 1.76% 1951
chr7 2596157 1.63% 1749
chr8 2013862 1.39% 1319
chr9 2102616 1.52% 1410
chr10 2208241 1.65% 1461
chr11 2788481 2.06% 1748
chr12 2654513 1.99% 1597
chr13 1187692 1.04% 790
chr14 1734002 1.62% 1104
chr15 1687322 1.65% 1112
chr16 1985869 2.20% 1301
chr17 2902919 3.49% 1851
chr18 977597 1.22% 648
chr19 3117781 5.32% 1940
chr20 1321383 2.05% 893
chr21 499812 1.07% 338
chr22 1097979 2.16% 730
chrX 1624365 1.04% 1035
chrY 784 <0.01% 1
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 33569 170 28956 1548.83 1115
global segment-length histogram

Files

Filename Size md5
ENCFF076ULV.bed.gz 772.21 KB d71553c23d563d12fd4c1c51571d1ee6
ENCFF076ULV.tabix.bed.gz 359.68 KB 02324fe1449c9efaa851f20390f7c5ff
ENCFF076ULV.tabix.bed.gz.tbi 198.91 KB 37de118c496a09cba119dbd6cf6b7fed
genomic_resource.yaml 2.09 KB 6e5cf97a6c2a654ceed9f46dfc0f624a
statistics/